Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2898 ATGTCACAGAACCTATCCCAATTCATAGAACCATCGCAGTCGTTAAACCTCTCCAAAGAATTGATCTCATATTCGATTCTATCACAagGGAATGCTTCCGCTTTGTTCCTCTTCCTGGCTCCAGTGATCACATTCAAGAGGATTATACAGAACAGATCCACAGAGAAGTTCTCGGGCATTCCATATGTTATGACACTGCTCAATTGTCTCCTTTCAGCTTGGTATGGTCTGCCTTTTGTGTCTCCCCACAACATATTAGTGTCAACAGTGAATGGCACCGGAACATTGATTGAAATCATATACGTGTTGATCTTCATCATATTGGCACCCAGGAAGGAGAAGGCTAAAATTCTTGGTCTTTTCACCTTCGTGCTGTCCGTGTTCTCCGCTGTTGTTTTCGTGTCCCTCTTTGCCCTGCATGGCACTTCCAGAAAGCTCTTCTGCGGCTTCGCTGCAGCCATATTTTCAATAATCATGTATGGCTCGCCACTCTCAATTATGAGACTAGTGATCAAAACTAAGAGTGTGGAGTTCATGCCCTTCTTCTTGTCGCTGTTTGTGTTTCTCTGCGGCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCAGTACCTAACGGTGTTGGTTCTGCTTTGGGGACAATGCAACTAATATTGTATTTCATATACCGAGACAAGAAAGGTGTTGCAAGAAAACAAGCCCCAACAGAGGAGGAGTCCATGGAGATGGGCGATGCAAAGCCCCAACAAGGGAAGCAATCCAATGCAAATGGAACTCAAGGATGA 798 0.4486 MSQNLSQFIEPSQSLNLSKELISYSILSQGNASALFLFLAPVITFKRIIQNRSTEKFSGIPYVMTLLNCLLSAWYGLPFVSPHNILVSTVNGTGTLIEIIYVLIFIILAPRKEKAKILGLFTFVLSVFSAVVFVSLFALHGTSRKLFCGFAAAIFSIIMYGSPLSIMRLVIKTKSVEFMPFFLSLFVFLCGTSWFIFGLLGRDPFVAVPNGVGSALGTMQLILYFIYRDKKGVARKQAPTEEESMEMGDAKPQQGKQSNANGTQG 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2898 265 MobiDBLite consensus disorder prediction 236 265 - -
Ssu1g2898 265 Gene3D - 144 238 - -
Ssu1g2898 265 PANTHER RAG1-ACTIVATING PROTEIN 1 29 263 - -
Ssu1g2898 265 PANTHER BIDIRECTIONAL SUGAR TRANSPORTER SWEET 29 263 IPR018180 GO:0051119
Ssu1g2898 265 Pfam Sugar efflux transporter for intercellular exchange 149 231 IPR004316 GO:0016021
Ssu1g2898 265 Pfam Sugar efflux transporter for intercellular exchange 30 112 IPR004316 GO:0016021
Ssu1g2898 265 MobiDBLite consensus disorder prediction 251 265 - -
Ssu1g2898 265 Gene3D - 29 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2898 Ssu-Chr1 76224197 76227605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2898 30 208 Miscellaneous Gene Families AT1G21460 78.212 4.71e-100 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2898 K15382 - gmx:100800304 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2898 1 76224197 76227605 Ssu1g2898 1 76224197 76227605 ECH