Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2895 ATGCAACACACCAAATTGCGTGGAACCGTACAGAGGTGTAACCTTAGCACATGGAGTAACAACCCGTCATTTTGGTCTCGTTCAATAAGGAACCACATTCAGCGAGGATCATTGAGATGTGCTCTTCTTGCGTATAAACAAACCCGGCAAGAAGGATTATACGACTCCAGTGTGGTCCCTCTGTTACTCAAGGCatgtgcttctctttccttcctTCATTCCGGGAAGGCCTTGCATGCAGAGTCCATCAAGGCCGGTTCAGAGAGCGACTTGTTCATTGGAACCGCATTGCTTGCCACTTACGCCAAATGCGGCGTCGTTAGGGATGCACGCAATCTGTTCGATACATTGCCCAAGAGAAATGTTGTGACTTGGAATGCCATGATTAGTGGGTACCTGAGAAATGGAGACACGGAATCTGCTTCTCTTGTGTTTGAGGAGATGCAAGGGAAAACGCAAGTGACTTGGAGTCAGATGATTGGTGGGTTTGCTAGGAATGGGGATATTGCCACTGCTAGGAGGTTGTTTGATGAGGTTCCCCATGCGTTGAAGGATGTGGTAACATGGACTGTGATGGTTGATGGGTATGCTAGAAAAGGGGAGATGGAAGCTGCCAGGGAGGTCTTTGAGATGATGCCTGAAAGGAATTGCTTTGTCTGGTCATCTATGATCTATGGGTACTGCAAGAAGGGCAATGTCACTGAGGCTGAGGCCGTTTTCAACCGGGTTCCGGTTCGGAATTTGGAGATTTGGAATTCCATGATTGCTGGCTATGTTCAGAATGGATTTGGCGAGAAAGCTCTGCAAGCTTTTGAGGGAATGGGGGATGAAGGGTTTGAGCCGGATGAATTCACTGTTGTTAGTGTTTTATCTGCTTGTGCTCAGCTGGGGCGCCTGGATGTTGGTAAGCAAATCCATCACATGATAGAAGATAAAGGGATAGCTGTGAACCCATTTGTTTTGAGTGGATTGGTTGACATGTATGCGAAATGTGGTGACTTGGTCCATGCAAGGTTGGTATTTGAAGGGTTCGCGGAGAGGAACATATTCTGCTGGAATGCTATGATTTCAGGTTTTGCCATCAATGGAAAATGCAGGGAGGTTCTTGAGTTTTTTGGTAGGATGGAGGACTCAAATATAAGGCCGGATGGTATCACCTTTCTTTCTGTACTCTCGGCTTGTGCTCATGGGGGTTTGGCCAGTGAAGCTTTGGAAGTAATATCTAAAATGGAGGCATACGGAATTGATATGGACATCAAACATTACGGATGCATGGTTGATCTCTTGGGCAGAGACGGGAGATTAAAAGATGCTTATGACTTGATTGTAAGAACGCCGGTGAAACCCAACGACATAGTTTTGGGGGCATTGCTTGGTGCATGCCGAATTCATTCAGATATGAACATGGCAGAACAAGTAATGAAGTTGATCGGTGACGACTCTGTTACAGCTGCTAATTCTCACAACGTGCTTTTGTCCAATATCTATGCAGCTTCTGAAAAATGGGAGAAAGCTGAAAGGATGAGGAGGATCATGGTAAATGGAGGGTCTCAAAAGACACCCGGGTGTAGTTCAATAATCTTCAGTGACTCTTGTGGATGA 1602 0.4551 MQHTKLRGTVQRCNLSTWSNNPSFWSRSIRNHIQRGSLRCALLAYKQTRQEGLYDSSVVPLLLKACASLSFLHSGKALHAESIKAGSESDLFIGTALLATYAKCGVVRDARNLFDTLPKRNVVTWNAMISGYLRNGDTESASLVFEEMQGKTQVTWSQMIGGFARNGDIATARRLFDEVPHALKDVVTWTVMVDGYARKGEMEAAREVFEMMPERNCFVWSSMIYGYCKKGNVTEAEAVFNRVPVRNLEIWNSMIAGYVQNGFGEKALQAFEGMGDEGFEPDEFTVVSVLSACAQLGRLDVGKQIHHMIEDKGIAVNPFVLSGLVDMYAKCGDLVHARLVFEGFAERNIFCWNAMISGFAINGKCREVLEFFGRMEDSNIRPDGITFLSVLSACAHGGLASEALEVISKMEAYGIDMDIKHYGCMVDLLGRDGRLKDAYDLIVRTPVKPNDIVLGALLGACRIHSDMNMAEQVMKLIGDDSVTAANSHNVLLSNIYAASEKWEKAERMRRIMVNGGSQKTPGCSSIIFSDSCG 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2895 533 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Ssu1g2895 533 TIGRFAM PPR: pentatricopeptide repeat domain 123 149 IPR002885 -
Ssu1g2895 533 TIGRFAM PPR: pentatricopeptide repeat domain 219 243 IPR002885 -
Ssu1g2895 533 TIGRFAM PPR: pentatricopeptide repeat domain 350 383 IPR002885 -
Ssu1g2895 533 TIGRFAM PPR: pentatricopeptide repeat domain 385 418 IPR002885 -
Ssu1g2895 533 TIGRFAM PPR: pentatricopeptide repeat domain 250 283 IPR002885 -
Ssu1g2895 533 TIGRFAM PPR: pentatricopeptide repeat domain 187 217 IPR002885 -
Ssu1g2895 533 TIGRFAM PPR: pentatricopeptide repeat domain 154 178 IPR002885 -
Ssu1g2895 533 Pfam PPR repeat 154 178 IPR002885 -
Ssu1g2895 533 Pfam PPR repeat 187 217 IPR002885 -
Ssu1g2895 533 Pfam PPR repeat 219 243 IPR002885 -
Ssu1g2895 533 Gene3D Tetratricopeptide repeat domain 24 148 IPR011990 GO:0005515
Ssu1g2895 533 Gene3D Tetratricopeptide repeat domain 149 215 IPR011990 GO:0005515
Ssu1g2895 533 PANTHER BNACNNG13520D PROTEIN 21 526 - -
Ssu1g2895 533 Pfam PPR repeat family 348 395 IPR002885 -
Ssu1g2895 533 Pfam PPR repeat family 248 294 IPR002885 -
Ssu1g2895 533 Pfam PPR repeat family 120 150 IPR002885 -
Ssu1g2895 533 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Ssu1g2895 533 PANTHER OS01G0913400 PROTEIN-RELATED 21 526 - -
Ssu1g2895 533 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 152 182 IPR002885 -
Ssu1g2895 533 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
Ssu1g2895 533 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 219 IPR002885 -
Ssu1g2895 533 SUPERFAMILY TPR-like 70 242 IPR011990 GO:0005515
Ssu1g2895 533 Gene3D Tetratricopeptide repeat domain 322 533 IPR011990 GO:0005515
Ssu1g2895 533 Gene3D Tetratricopeptide repeat domain 216 321 IPR011990 GO:0005515
Ssu1g2895 533 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 121 151 IPR002885 -
Ssu1g2895 533 Pfam E motif 486 526 IPR046848 -
Ssu1g2895 533 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 348 382 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2895 Ssu-Chr1 76178782 76180383 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2895 25 530 Glycoside Hydrolase AT3G49170 29.808 5.41e-64 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2895 - - gmx:100802813 922.154
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2895 1 76178782 76180383 Ssu1g2895 1 76178782 76180383 ECH