Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2892 ATGAGCTTTGGTGTGATAATACGTGTAGAAAGTGAGGCATTTCAGGTTCTTAAGGGGATTCCTGACAGACCTGAAGTTGTGCTTGTTAAATTAAGAGAGATCAAATGTAagatagagaagaaaataagtgtGCAGGATAGGTTTAAGAATACGGTATCATCAAAGGATGTTGTGCGGATTGTTGATGGTCCCTGCAAAgGAAAACAAGGTCCTGTGGAGCACATATATAGAGGAGTCTTGTTCATCTTTGATCGCCATCATCTTGAACATGCAGGCTTTATATGTGCTAAGGCCCAGTCATGTGTAGTTGTGGGAGGTTCGCGCTCCAGTGGTGACAGAAATGGTGATGCCTActcaagatttgccaatcttaGGAGTCCAAGTCGTATTCCACCGTCCCCCAGGAGGTTTTCTCGAGGAGGGCCAATGGATTCTGGAGGGAGACATAGGGGTGGAAGGGGGCATGATGGTTTGGCAGGTACAACTGTTAAAGTACGCCAGGGTCCCTATAAAGGTTACCGTGGGCGCGTTATTGATGATAAAGGCACATCAGTTCGTGTTGAGTTAGAATCCCAAATGAAGGTTGTGACAGTTGACCGCAACCATATTTCTGACAACGTGGCTGTAACACCATATCGTGATACTTCTCGCTATGGAATGGGAAGTGAAACCCCAATGCATCCTTCCCGAACTCCCTTACATCCATATATGACTCCTATGAGAGATCCTGGAGCAACACCTATTCATGATGGAATGAGGACACCTATGCGTGACCGAGCATGGAATCCTTATACTCCAATGAGTCCTCCAAGGGATAACTGGGAAGATGGAAATCCAGGCTCTTGGGGAACCAGTCCACAGTATCAGTCCGGAAGCCCTCCTTCACGGCCATATGAAGCCCCAACTCCTGGTGCTGGTTGGGCTAGCACTCCTGGAAATTATAGTGAAGCTGGAACACCGCGGGACAGTTCTGCCTATGCCAATGCTCCAAGCCCATATTTACCATCAACACCTGGTGGGCAGCCTATGACACCAAGTTCAGCATCTTATCTTCCTGGCACCCCTGGAGGACAGCCCATGACTCCAGGCACAGGTGGTATGGACATGATGTCTCCGGTTTTAGGTGGGGACCATGAAGGGCCATGGTTTATGCCAGATATATTAGTCAACGTACACAGGGCTGGAGAGGAATCTGTTGGAGTTATAAGAGAGGTTCTTCCGGATGGCTCTTACAAGGTAGCTCTTGGGTCTAGTGGGAATGGTGAAACGATTACCGCCCTTCCTAATGAAATGGAGGCTGTGGTTCCAAGAAAATCTgacaaaataaagattatggGTGGAGCATTGCGTGGTGCCACCGGCAAGTTGATTGGTGTAGATGGTACTGATGGAATTGTAAAAGTAGATGACACATTGGATGTGAAGATTTTAGACTTAGTTATTTTGGCAAAATTAGCTCAACCATGA 1467 0.456 MSFGVIIRVESEAFQVLKGIPDRPEVVLVKLREIKCKIEKKISVQDRFKNTVSSKDVVRIVDGPCKGKQGPVEHIYRGVLFIFDRHHLEHAGFICAKAQSCVVVGGSRSSGDRNGDAYSRFANLRSPSRIPPSPRRFSRGGPMDSGGRHRGGRGHDGLAGTTVKVRQGPYKGYRGRVIDDKGTSVRVELESQMKVVTVDRNHISDNVAVTPYRDTSRYGMGSETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQSGSPPSRPYEAPTPGAGWASTPGNYSEAGTPRDSSAYANAPSPYLPSTPGGQPMTPSSASYLPGTPGGQPMTPGTGGMDMMSPVLGGDHEGPWFMPDILVNVHRAGEESVGVIREVLPDGSYKVALGSSGNGETITALPNEMEAVVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAQP 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2892 488 MobiDBLite consensus disorder prediction 109 160 - -
Ssu1g2892 488 MobiDBLite consensus disorder prediction 340 354 - -
Ssu1g2892 488 Gene3D - 140 206 IPR014722 -
Ssu1g2892 488 MobiDBLite consensus disorder prediction 308 331 - -
Ssu1g2892 488 CDD KOW_Spt5_4 55 97 IPR041977 -
Ssu1g2892 488 SMART kow_9 51 78 IPR005824 -
Ssu1g2892 488 SMART kow_9 435 462 IPR005824 -
Ssu1g2892 488 SMART kow_9 156 183 IPR005824 -
Ssu1g2892 488 CDD KOW_Spt5_5 158 204 IPR041978 -
Ssu1g2892 488 CDD KOW_Spt5_6 429 486 IPR041980 -
Ssu1g2892 488 MobiDBLite consensus disorder prediction 278 295 - -
Ssu1g2892 488 MobiDBLite consensus disorder prediction 214 369 - -
Ssu1g2892 488 PANTHER SUPPRESSOR OF TY 5 1 487 IPR039659 GO:0006357|GO:0032784
Ssu1g2892 488 PANTHER KOW DOMAIN-CONTAINING PROTEIN-RELATED 1 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2892 Ssu-Chr1 76157168 76160659 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2892 K15172 - gmx:100784916 904.434