Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2890 ATGGATATATGGAATAGTTGGTGGGTTTTGCAAATTATGCAGTTGCTGGGTTTGTTCAGTTTTTGGATGTCATTTACCAAGTTTAGGACTCTATTCTCAAGAGCTTTTGGTTTTGGTCACAAAGTTGTTAAGGGTGACTTCAATGCCTGGATCTTTGGTTCCTTCAGTGGGTTGGTCACAGTTGGTTCTTTCATATTCTTCCTCTTGGTCCTTTCCTGGGCTTACTTATATTCTTTTCCCACTTCTCCCTCAGTGATTCAGAGTTATGATGAGATTCCCAACAGTTCTCCCTCACTTGTTCAGAGTTATGAGATTCCCAACAGCTCGCACTCATTTGTTCAGAGTTATGGTGAGATTTTAAAATCCAATGTTTCAATGGGCACATGCAATGTGTTTGAAGGAAGTTGGATAAGGGATGATAGCTACCCTTTGTATGATGCTTCTCACTGCCCTTTTGCAGAAAGGGGTTTTGATTGCCTTACTAATGGGAGAAAAGATAGAGGTTATAGCAAATGGAGGTGGAAACCCAAGAACTGTGATATTCCAAGGTTTGATGCCCGTAGAATACTTGAACAACTTCGTGGGAAAAGGGTGGTGTTCGTTGGCGATTCGTTGAGTAGGACGCAATGGGAGTCCATGATATGTTTGCTAATGACAGGAGTTGAGAATAAGAAGAGTGTCTATGAAATCAAAGGCAACAAGATCACAAAACAGATAAGGTTTTTAGGCGTGAGGTTTAGTTCTTTTGATGTTAGAATCGATTTTTATCGATCGGTGTTCCTGGTGAAGCCTGGTCCTGGGCCTAGACATGCACCCCAAAGGGTGAAGACAACACTGAGATTAGACAAGATGGATGATATTAGCCATGAGTGGATTGATTCTGATGTTCTTATATTCAATTCAGGTCACTGGTGGACACGGACTAAGCTTTTTGACATGGGCTGGTATTTTCAGGTTGGTAGCTCACTGAAGCTTGGAATGCCAATCAATTCTGCTTTCCACACGGCTTTGCTCACCTGGGCATCTTGGGTAGAGAACACAATTAACACAAACCGGACAAGAATATTCTTCCGCACCTTTGAATCATCACATTGGAGTGGACCGAACCGTAATTCTTGCAAAGTGACTCAAAGGCCTAGGAAGAGAACTAATGGCAAGGAGCGAAACCCAATTTCAGATCTGATCAACAGAGTTGTCAAAAATATGAGTGCTCCTGTAACAGTTCTGCACGTTACACCAATGACTGCATATAGAAGTGATGGACACGTGGGCACTTGGAGTGACAAGCCATCTGTGCCTGATTGTAGTCATTGGTGTTTACCCGGTGTTCCTGATATGTGGAACGAAATTCTCCTCTCATATTTTTTACCTAAAGGAGCAAATTAG 1386 0.4228 MDIWNSWWVLQIMQLLGLFSFWMSFTKFRTLFSRAFGFGHKVVKGDFNAWIFGSFSGLVTVGSFIFFLLVLSWAYLYSFPTSPSVIQSYDEIPNSSPSLVQSYEIPNSSHSFVQSYGEILKSNVSMGTCNVFEGSWIRDDSYPLYDASHCPFAERGFDCLTNGRKDRGYSKWRWKPKNCDIPRFDARRILEQLRGKRVVFVGDSLSRTQWESMICLLMTGVENKKSVYEIKGNKITKQIRFLGVRFSSFDVRIDFYRSVFLVKPGPGPRHAPQRVKTTLRLDKMDDISHEWIDSDVLIFNSGHWWTRTKLFDMGWYFQVGSSLKLGMPINSAFHTALLTWASWVENTINTNRTRIFFRTFESSHWSGPNRNSCKVTQRPRKRTNGKERNPISDLINRVVKNMSAPVTVLHVTPMTAYRSDGHVGTWSDKPSVPDCSHWCLPGVPDMWNEILLSYFLPKGAN 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2890 461 MobiDBLite consensus disorder prediction 365 389 - -
Ssu1g2890 461 Pfam PMR5 N terminal Domain 128 180 IPR025846 -
Ssu1g2890 461 PANTHER LEAF SENESCENCE RELATED PROTEIN-LIKE 48 456 - -
Ssu1g2890 461 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 181 453 IPR026057 GO:0016740
Ssu1g2890 461 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 48 456 IPR029962 GO:0016413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2890 Ssu-Chr1 76126228 76129352 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2890 - - gmx:100802445 845.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2890 1 76126228 76129352 Ssu1g2890 1 76126228 76129352 ECH