Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2887 ATGGTGCTCACATCCTCTGCGCGTGATTACGTCAACCGCATCTTGCAGGACATCTCCGGCATGAAGGTTCTCATCCTTGATTCTCAAACGGTAGGTATTGTGAGTGTTGTGTATTCACAGTCAGAGCTTCTTCAGAAAGAAGTGTTTTTGGTTGAGTTAGTAGATTCTATCTCCAAGTCAAACGAATCAATGTCACATCTCAAGGCCATTTACTTCCTTCGACCTACATCAGAGAATATCCAGCTTTTGCGCCGCCAGCTGGCTAATCCTAGATTTGGAGAGTATCATCTATTTTTCTCCAACATATTGAAGGACACTCAGATTCACATACTTGCTGATTCAGATGAACAGGAAGTTGTCCAGCAAGTTCAGGAGTTCTATGCAGATTTTGTTGCAATTGATCCTTATCATTTCACTTTGCATGTGCCTTCACATCACATATATATGCTCCCAGCTGTGGTAGATCCTTCAACAGTGCAACACTTCTGTGATCGGGTTGTTGATGGTCTTGCAGCTGTTTTTTTGGCATTAAAACGAAGACCAGTAATTAGGTATCAACGGACATCTGACATTGCAAAAAGGATAGCACAGGAAGCAGCTAAACTGATGTACCAAGAGGAAAGTGGTCTTTTTGATTTTAGGCGAATGGAAGTTTCTCCATTGTTGTTGGTGATTGACAGGAGGGATGATCCTGTAACCCCATTGCTAAATCAATGGACCTATCAGGCTATGGTTCATGAATTAATAGGAATCCAAGACAACAAAGTGGACTTAAAATCCATTGGTAAATTTCCAAAGGATCAGGAGGAGGTTGTGTTGTCATCAGAACAAGATTCCTTTTTCAAAGCTAACATGTATGAGAATTTTGGAGATATAGGTATGAATATCAAGCGGATGGTTGATGAATTTCAGCAAGTGTCAAAAAGTAACCAGAACATCCAAACAATagAGGACATGGCCAAATTTGTAGATAATTATCCTGAGTACAGAAAAATGCATGGAAATGTGACAAAACATGTGACTTTAGTAACCGAAATGAGTAAGATAGTTGAAGAGCGAAAACTTATGCTAGTTTCACAAACAGAACAGGAGTTGGCTTGCAATGGAGGGCAAGGAGCTGCTTTTGAGGCAGTGACAAATCTACTAAACAATGAAAGCATATCAGATGTGGACCGACTACGTCTGGTCATGCTGTATGCTTTACGATATGAGAAAGATAGCCCCGTTCAATTAATGCAGCTCTTCAACAAACTGGCTTCCAGATCTGCCAAGTACAAAGCTGGGCTTGTCCAGTTTCTTCTGAAGCAAGCAGGTGTTGACAAGAGAACAGGTGATCTTTATGGAAATCGAGATCTAATGAATATTGCCCGTAACATGGCTCGTGGTTTGAAGGGCGTTGAGAATGTTTACACCCAGCACCAGCCACTTCTGTTTCAAGTCATGGAAAGCATTGTCAAAGGGAGGTTGAGAGATGTGGACTACCCGTTTGTTGGAAATCACTTTCAACAGGGAAGGCCGCAGGAAGTGATTATCTTCATTGTAGGTGGGACAACTTACGAGGAGTCACGGTCTGTTGCTTTACAAAATGCCAGCAATACCAGCATTCGTTTTATAGTTGGTGGCTCTTCTGTTCTTAATTCTAAAAGGTTTTTAAGGGACTTGAAAGAAGCTCAAAGGGTAGCTCGTTCTAGCACCACTGTTGTTTGA 1707 0.4148 MVLTSSARDYVNRILQDISGMKVLILDSQTVGIVSVVYSQSELLQKEVFLVELVDSISKSNESMSHLKAIYFLRPTSENIQLLRRQLANPRFGEYHLFFSNILKDTQIHILADSDEQEVVQQVQEFYADFVAIDPYHFTLHVPSHHIYMLPAVVDPSTVQHFCDRVVDGLAAVFLALKRRPVIRYQRTSDIAKRIAQEAAKLMYQEESGLFDFRRMEVSPLLLVIDRRDDPVTPLLNQWTYQAMVHELIGIQDNKVDLKSIGKFPKDQEEVVLSSEQDSFFKANMYENFGDIGMNIKRMVDEFQQVSKSNQNIQTIEDMAKFVDNYPEYRKMHGNVTKHVTLVTEMSKIVEERKLMLVSQTEQELACNGGQGAAFEAVTNLLNNESISDVDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKAGLVQFLLKQAGVDKRTGDLYGNRDLMNIARNMARGLKGVENVYTQHQPLLFQVMESIVKGRLRDVDYPFVGNHFQQGRPQEVIIFIVGGTTYEESRSVALQNASNTSIRFIVGGSSVLNSKRFLRDLKEAQRVARSSTTVV 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2887 568 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 3 555 IPR001619 GO:0016192
Ssu1g2887 568 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 238 351 IPR043127 -
Ssu1g2887 568 PIRSF VPS45_Sec1 1 565 IPR001619 GO:0016192
Ssu1g2887 568 Gene3D - 353 474 - -
Ssu1g2887 568 Gene3D - 3 128 IPR043154 -
Ssu1g2887 568 Gene3D - 138 555 IPR027482 -
Ssu1g2887 568 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 45 3 555 - -
Ssu1g2887 568 SUPERFAMILY Sec1/munc18-like (SM) proteins 5 556 IPR036045 -
Ssu1g2887 568 Pfam Sec1 family 22 553 IPR001619 GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2887 Ssu-Chr1 76089730 76096578 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2887 K12479 - gmx:100782786 1065.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2887 1 76089730 76096578 Ssu1g2887 1 76089730 76096578 ECH