Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2876 ATGGCATCATCAAGTGTTAGGGAGGACAAATACCGCCTCTATTTGCGTGAAGACAGTGAGAAGAACACCAAATGGAGATATGGTGCCCCTCCAAATTATGACGCTGTCAACAAGCTATTTGAAGAAGGCAGAACCAAGGTATGGCCTCCGGGTTCACTTGAAGAGCAGGTGCAGAATCTAGTCAAGAGTTGGGAGATGGAAATGTTCCACAAGGTGGATATGCAGGATTACAGATCAGTGGACCCAAAGAAATACACTTTCAGCCTAAACGGAAGGAAGCCTATTAGTttggaagagaaaaggaagctTGGTGGAGGGTATATCCCTCTGTTGCAAACCTCCCTGCCAGAGAAACTCAGGCCTTACAATCCGTATGAAGAAACAGCAGATTCATCCCACAAGGCCTTTACGACAACATTCCCACGTGGGTTTGCTTTGGAGATTCTGCACGTGTATTCTGGACCACCAGTGATTGTGTACAAGTTCAGGCACTGGGGCTACATGGAGGGTCCCTTCAAAGGCCACGCCCCAACTGGAGAGAAAATTGAAGTTTATGGGATGGCCATTTTCACGTTGGATGAGAATTCAAAAATCGTGAAGGTGGAGTTCTTTTATGATCCTGCCGAACTGCTGGGAGGTCTCCTGAAAGGTCCCGACTTTGATGGCAGTGCTGAAGATGCTGTTGCAAGCTGTCCTATACTCAGGAACACTGGCTAG 717 0.463 MASSSVREDKYRLYLREDSEKNTKWRYGAPPNYDAVNKLFEEGRTKVWPPGSLEEQVQNLVKSWEMEMFHKVDMQDYRSVDPKKYTFSLNGRKPISLEEKRKLGGGYIPLLQTSLPEKLRPYNPYEETADSSHKAFTTTFPRGFALEILHVYSGPPVIVYKFRHWGYMEGPFKGHAPTGEKIEVYGMAIFTLDENSKIVKVEFFYDPAELLGGLLKGPDFDGSAEDAVASCPILRNTG 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2876 238 PANTHER PATHOGEN-RELATED PROTEIN-LIKE 1 238 - -
Ssu1g2876 238 PANTHER PATHOGENESIS-RELATED FAMILY PROTEIN 1 238 - -
Ssu1g2876 238 Gene3D - 117 215 - -
Ssu1g2876 238 SUPERFAMILY NTF2-like 132 211 IPR032710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2876 Ssu-Chr1 75944705 75945810 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2876 - - gmx:100805630 466.077