Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2875 ATGCCACCAACAGTGTCATCTACTTTTGAGTCAGAGAGGCACCCTGTGAGATATGTGCATACAGTTTCAGAGGCAGGTCGCCTTCTTCCTTCAGCTAGCCGCTGGAACTCCATAGCACTTGACTTTAAACTTGCCCCTAAGTCCTCCACTGCCTATGAATCTATCCCTTCCCAGTACCCAAAATCTGTTGACTACAATCTTGTTATCACTGACAGGAAGCActttcattgttttatttttgtttttgtaactataattTTTGCCATCTTAGCAGCTGTTCTGCTGGTGCACTTTTTACCTCAAAAGCACAAGCATCAAGGGTCTTCAATCAATCTCAAACTGGCAATAAACCAGGCTCTAACATTTTATGATGCCCAAAAATcCGGGCACTATCCAAGGAACAGTCCAGTGAAATTTCGAGGAGATTCAGGATTACGGGATGGGGATTCAGCTAAGACTAATCTTACTGGTGGATTTTATGATTCTGGCAACAACATTAAGTTCACCTTCACCACAGCTTATACTATGACCTTGTTGAGTTGGACTGTTATGGAATATCAAAGTAAATATGCTGATATTGGTGAGCTTGATCATGTCAGGGACATCATTAGATGGGGTAGTGACTACCTGCTCAAGGTGTTCATTCCCCCAAATTCAACAGCTGGATCAAACCTTACACTTTATTCCCAGGTTGGAAGTACCATTAGTAATAACAATGAACCTAATGATGTGAGTTGCTGGCAACGACCTGAGGATATGAACTACGAGAGACTAGTTTCAATCTGTGATGGCTCTGCTTCAGATTTAGCTGGTGAAATTGTGGCAGCATTATCTGCATCATCGATGGTATTCAGAGAAGACAAAGATTACTCGAGGAGACTTGTCCAAGCAGCAGAAAGCCTCTATGAGGCAATCACAAGGGAAGATCCTACAAAACAGGGGACCTACACCATGGTTGATGCCTGTGGGAAACAAGCAAGAATGCTTTATAACTCAACTAGCTACAAAGATGAGTTGGCTTGGGGAGCAACTTGGTTGTTTCTTGCTACTGCAAAAGCTGATTACCTTGCAAACGCAactgcaatttttttatcagcCAAGAGTGATGAATCAAGTGTTGACAAAGGGATCCTTTATTGGAATAACAAACTCAATGCTGTGGAGGTTTTGCTTACCGGTATTCGATACTTCCGTGATCCTGGCTTCCCACATGAGGATGTTTTGAAACTTTCATTTAACTCTACTGATACTCTCATGTGTTTTTATCtattcaataaatactttagcAGGACCCCTGGTGGATTGATTATCCTGAAACCTGATAATGAGCCATTACTACAGTATGCTGCTACAGCATCTTTTCTTAGTAAATTGTACAGCGACTACCTTGATCATCTCAAAATGTCTGGTGCAAGTTGCAAGACTGATGCGTTCTCGGTTAACTACATCTTGGGGCAAAACCCTATGAAAATGAGCTATTTAGCGGGCTATGGTGACAGGTTTCCTGTCCAGGTTCATCACAGAAGTGCATCAATCCCTTGGAATAACCAACCCTACACTTGTGATGATGGTAAGAGATGGCTAAACTCTAAAGATCCAAATCCACAGGTTCTTTTGGGAGCCATGGTGGGAGGGCCAGACACTAATGATAATTTCATGGATCAAAGGACCAACCAAAAGTTCACTGAGCCAAACATAGCAAGCAATGCTGGCTTAGTTGCAGCACTGATTGCACTTCAAGATCCTTATAATTCACGTGACTTCAAAAACTCATTGTGGGGATGGACTTGA 1791 0.4104 MPPTVSSTFESERHPVRYVHTVSEAGRLLPSASRWNSIALDFKLAPKSSTAYESIPSQYPKSVDYNLVITDRKHFHCFIFVFVTIIFAILAAVLLVHFLPQKHKHQGSSINLKLAINQALTFYDAQKSGHYPRNSPVKFRGDSGLRDGDSAKTNLTGGFYDSGNNIKFTFTTAYTMTLLSWTVMEYQSKYADIGELDHVRDIIRWGSDYLLKVFIPPNSTAGSNLTLYSQVGSTISNNNEPNDVSCWQRPEDMNYERLVSICDGSASDLAGEIVAALSASSMVFREDKDYSRRLVQAAESLYEAITREDPTKQGTYTMVDACGKQARMLYNSTSYKDELAWGATWLFLATAKADYLANATAIFLSAKSDESSVDKGILYWNNKLNAVEVLLTGIRYFRDPGFPHEDVLKLSFNSTDTLMCFYLFNKYFSRTPGGLIILKPDNEPLLQYAATASFLSKLYSDYLDHLKMSGASCKTDAFSVNYILGQNPMKMSYLAGYGDRFPVQVHHRSASIPWNNQPYTCDDGKRWLNSKDPNPQVLLGAMVGGPDTNDNFMDQRTNQKFTEPNIASNAGLVAALIALQDPYNSRDFKNSLWGWT 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2875 596 Gene3D - 109 582 IPR012341 GO:0005975
Ssu1g2875 596 PANTHER ENDOGLUCANASE 26 590 - -
Ssu1g2875 596 PANTHER ENDO-1,4-BETA-GLUCANASE 26 590 - -
Ssu1g2875 596 SUPERFAMILY Six-hairpin glycosidases 110 583 IPR008928 GO:0005975
Ssu1g2875 596 Pfam Glycosyl hydrolase family 9 115 576 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2875 Ssu-Chr1 75934175 75936784 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2875 61 579 Glycoside Hydrolase AT5G49720 43.646 9.82e-136 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2875 K01179 - gmx:100805472 1078.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2875 1 75934175 75936784 Ssu1g2875 1 75934175 75936784 ECH