Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2866 ATGCAGAGCAGGGGATCGAGTCACAGACTCTCGGGTATGGCTAGTAATCGATCCCGCATTCCCGCACTCCTCATCTCCATGTTCGCTACTTTCGCTTCCATCTACGTCGCTGGAAGGCTATGGCAGGACGCAGAGAATCGCGTTTATCTCATCAAAGAGCTCGATAGGATCACTGGCCAGGGACGATCTGCTATATCTGTGGATGATACATTGAAGATCATAGCCTGCAGGGAACAACATAAGAAGCTTGATGCCCTTGAGACGGAACTTGCTGCAGCTAGACAAGAGGGTTTTGTTTCAAAGCCCTTGATAGAGACTAATGGAACTTACTCTACGAGAAGGCCATTAGTCGTGATAGGTATACTGACAAAGTTTGGCCGCCAGAAGAATAGAGACGCAATCCGCAAGGCATGGATGGGAAGTGGTGCAGCTTTGAAGAAAATTGAAGACGGAAAGGGCATCATCTTGCGATTTGTTATTGGTAGAAGTGAAAATCGTGGAGACAATCTGGATAAAGACATTGATCGTGAGAATAGGCTGACAAATGACTTCTTAATTCttGACAATCATGTGGAAACAAATGATGGATTCCCAAAGAAGGCTAAATTGTTCTTTGCTCATGCTGCAGACAAATGGGATGCTGAGTTTTATGCTAAAGTCAACGATGATGTTTATGTAAATATTGATGCCTTGGGAGCTACACTTACTACTCATTTGGACAAACCTCGTGTTTACATGGGATGCATGAAATCAGGCGAAGTTTTCTCTGAGCTGAACCATAAATGGTATGAACCAGAGTGGTGGAAATTTGGTGACAAAAAATCATATTTTCGTCATGCTTCAGGAGAGATGTATGTTATATCAAGAGCTTTGGctaaatttatatcaataaacaGATCTATTCTTCGTACCTATGCCCACGATGATGTGAGCGCTGGATCCTGGTTTATTGGGCTTGATGTGAAGCATGTTGATGAGGCAAAGTTTTGTTGCACATCTTGGTCCACAGGAGCAATTTGTGCTGGTGTCTGA 1032 0.4312 MQSRGSSHRLSGMASNRSRIPALLISMFATFASIYVAGRLWQDAENRVYLIKELDRITGQGRSAISVDDTLKIIACREQHKKLDALETELAAARQEGFVSKPLIETNGTYSTRRPLVVIGILTKFGRQKNRDAIRKAWMGSGAALKKIEDGKGIILRFVIGRSENRGDNLDKDIDRENRLTNDFLILDNHVETNDGFPKKAKLFFAHAADKWDAEFYAKVNDDVYVNIDALGATLTTHLDKPRVYMGCMKSGEVFSELNHKWYEPEWWKFGDKKSYFRHASGEMYVISRALAKFISINRSILRTYAHDDVSAGSWFIGLDVKHVDEAKFCCTSWSTGAICAGV 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2866 343 Coils Coil 76 96 - -
Ssu1g2866 343 Pfam Domain of unknown function (DUF4094) 19 95 IPR025298 -
Ssu1g2866 343 PANTHER HYDROXYPROLINE O-GALACTOSYLTRANSFERASE HPGT1 1 337 - -
Ssu1g2866 343 Pfam Galactosyltransferase 130 325 IPR002659 GO:0006486|GO:0016020|GO:0016758
Ssu1g2866 343 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 1 337 IPR002659 GO:0006486|GO:0016020|GO:0016758
Ssu1g2866 343 Gene3D - 106 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2866 Ssu-Chr1 75796564 75803411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2866 23 343 Glycosyltransferase AT5G53340 71.340 2.70e-177 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2866 K20854 - gmx:100779561 666.766