Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2865 ATGGACTACGATTTCAGAAGCAGGTCGGGCCCACAAGCTCCGATGTACCGTCCGCCACCGTCGCCGATGTACCGCCCGTCGCCGTATCAGCAGAATCCTCCTCCTTCTTCAGGATTGGGCGTTAGGGTTGGTATAAAGCCAGAATATAGGATCACACCGCCGCCTCATTTATCATCACCTGCAGGAGATAATCCACGGAGCAACTTCCAATTTGATTTTGGACTGGAGAGAAAAATTTTGGCTGAAGCAGAGAAGGATAACCCAAATTGGAGCAAATTTGGATCAGAAAATATCCTGACTAAAGTTTCTGATTCATCAACATCAAAGGTTACTGCTTTGGATCCCATTGTGAGCAAATTTATAGCTATGGGGCTTAGCCGAGAGGCTGTTCCCATCGCTGTTGAAAATTATGGTGATAATCCAACCAAAGTTCAGGAATTTGTCAATGGCTACACCGTTCTCCGTGAAATGGGATTTTCATCAAATAGCGTTGCTGAAGCCCTGGTTATGAATGACAATCATACGGACAGGGCACTAGCACATTTCCTTAGCGGCTCGTCGTGA 564 0.4645 MDYDFRSRSGPQAPMYRPPPSPMYRPSPYQQNPPPSSGLGVRVGIKPEYRITPPPHLSSPAGDNPRSNFQFDFGLERKILAEAEKDNPNWSKFGSENILTKVSDSSTSKVTALDPIVSKFIAMGLSREAVPIAVENYGDNPTKVQEFVNGYTVLREMGFSSNSVAEALVMNDNHTDRALAHFLSGSS 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2865 187 MobiDBLite consensus disorder prediction 1 68 - -
Ssu1g2865 187 MobiDBLite consensus disorder prediction 13 33 - -
Ssu1g2865 187 PANTHER - 31 187 - -
Ssu1g2865 187 PANTHER LD44032P 31 187 IPR038870 GO:0000813|GO:0043130|GO:0043162
Ssu1g2865 187 Gene3D UBAP1 SOUBA domain 97 187 IPR042575 -
Ssu1g2865 187 SUPERFAMILY UBA-like 143 185 IPR009060 GO:0005515
Ssu1g2865 187 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 143 185 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2865 Ssu-Chr1 75784437 75787758 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2865 - - gmx:100500107 313.538