Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2862 ATGATGAGCCAACTCGCGCGTGTTGAACCGTGTGGGTCCAGTGAACCCCATCCAGCTGGCTCTCGCTCAGAGACCGCTCCTTTTGGGGTGGCACTTTTTGACCCCGGGCAAGGAAAAAAGGAATGGATTTCGTACAGAAAACGCCAAGTTTTCGTGATGGCATCCAAGCGGATCTTGAAGGAACTCAAGGATCTCCAGAAGGATCCTCCTACCTCATGCAGCGccgGTCCTGTTGCTGAAGACATGTTTCACTGGCAAGCAACAATTATGGGTCCTCCCGACAGTCCTTATGCTGGAGGTGTTTTCCTAGTCACTATTCATTTCCCTCCAGATTATCCCTTCAAGCCACCCAAGGTTGCATTCAGGACAAAGGTATTTCACCCAAATATAAATAGCAACGGAAGCATTTGCCTTGACATATTGAAGGAGCAGTGGAGCCCTGCGCTAACTATTTCGAAGGTGTTGCTCTCAATTTGTTCTCTGTTGACGGACCCCAATCCTGATGATCCTCTGGTCCCTGAAATCGCCCACATGTACAAGACAGACAGGAACAAGTACGAGTCAACTGCCAGAAGCTGGACCCAGAAATATGCCATGGGCTAA 603 0.4909 MMSQLARVEPCGSSEPHPAGSRSETAPFGVALFDPGQGKKEWISYRKRQVFVMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYESTARSWTQKYAMG 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2862 200 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 53 199 IPR000608 -
Ssu1g2862 200 MobiDBLite consensus disorder prediction 1 30 - -
Ssu1g2862 200 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 55 197 - -
Ssu1g2862 200 Gene3D Ubiquitin Conjugating Enzyme 45 200 IPR016135 -
Ssu1g2862 200 Pfam Ubiquitin-conjugating enzyme 57 193 IPR000608 -
Ssu1g2862 200 PANTHER BNAA01G32320D PROTEIN 55 197 - -
Ssu1g2862 200 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 126 141 IPR023313 -
Ssu1g2862 200 SUPERFAMILY UBC-like 42 199 IPR016135 -
Ssu1g2862 200 CDD UBCc 55 194 IPR000608 -
Ssu1g2862 200 SMART ubc_7 56 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2862 Ssu-Chr1 75749108 75754455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2862 54 166 Miscellaneous Gene Families AT3G17000 36.975 6.29e-20 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2862 - K06689 gmx:100809895 313.923