Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2860 ATGGCGGATTCAGAGCGAATCCAAAATCCGTGGATGGCTTCGGAGGAAATGAACGGCGGGGGCGCAGATTCCAGGGAACGCTCTTCTCTTCCTCCGCCGCCGCAATCGTCCAATACTGATAAATTGGGAATCGGACAACGAGCTTTCTCCGCCGCCGGCGCCGCCTTCCTCTCCGCCATCATTGTCAATCCCCTCGATGTTGCCAAGACAAGGTTGCAAGCACAAGCTGCTGGGGTCTCTTATTCTCATCCGCTCAGTAATATGACCAGTAGAATGGCTTGTTTTGGGCCAAATATGTTGTTTGCTGATTTAAGATGTTCTCCATCATGCAACCGGGCTGGAATCCACGGCACAGTATCCATTTGTCCTCCTGAGTGTTTTCGCTACAAAGGAACACTGGATGTCATCTACAAAATTATACAGCAGGAGGGATTTGCTAGGCTATGGAGAGGCACAAATGCTGGCCTGGCTCTTGCAGTGCCAACTGTAGGAATTTACCTTCCTTGCTATGACATATTCCGCAATTGGTTGGAGGAATTCACAGCTGAAAATGCACCAACCACTACTCCTTATGTACCTCTAGTGGCTGGTTCATTGGCACGCTCTCTAGCTTGCGCAACCTGCTATCCTATTGAACTTGCTAGAACTCGTATGCAGGCATTTAAAGAGACTCAAATTGGTAAAAAGCCTCCTGGAGTGATCCAGACTCTCCTAGGTGTTGTCTCACATGTCAAAAGCACAAACAGTCCACAGAACAGCTTGCAAGGGTATCGTGTTCTGTGGACTGGTATGGGAGCTCAACTTGCCCGTGATGTACCTTTCTCTGCTATTTGTTGGTCGACACTTGAACCAACTAGAAGAAAACTTCTAAGTTTAGTTGGAGGTGATGATGCCAATGCATTGAGTGTTCTTGGGGCAAATTTTGGAGCTGGTTTTGTTGCAGGAACTTTAGCAGCTGGAGCTACATGTCCGCTTGATGTTGCAAAAACTCGAAGGCAGATAGAGaGGGATCCTGTTAGGGCATTGAAAATGACTACGAGACAGACACTGATGGAGGTGTGGAGAGGAGGAGGCTTGAAGGGATTGTTTACTGGTTTTGGTCCACGAGTTGGTCGAGCAGGCCCCTCCGTTGGAATTGTGGTTTCATTTTATGAAGTTGTAAAGTTTGTTCTACATCATCGGTACACAGCATCATGA 1197 0.4779 MADSERIQNPWMASEEMNGGGADSRERSSLPPPPQSSNTDKLGIGQRAFSAAGAAFLSAIIVNPLDVAKTRLQAQAAGVSYSHPLSNMTSRMACFGPNMLFADLRCSPSCNRAGIHGTVSICPPECFRYKGTLDVIYKIIQQEGFARLWRGTNAGLALAVPTVGIYLPCYDIFRNWLEEFTAENAPTTTPYVPLVAGSLARSLACATCYPIELARTRMQAFKETQIGKKPPGVIQTLLGVVSHVKSTNSPQNSLQGYRVLWTGMGAQLARDVPFSAICWSTLEPTRRKLLSLVGGDDANALSVLGANFGAGFVAGTLAAGATCPLDVAKTRRQIERDPVRALKMTTRQTLMEVWRGGGLKGLFTGFGPRVGRAGPSVGIVVSFYEVVKFVLHHRYTAS 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2860 398 ProSiteProfiles Solute carrier (Solcar) repeat profile. 42 176 IPR018108 -
Ssu1g2860 398 Gene3D Mitochondrial carrier domain 23 122 IPR023395 -
Ssu1g2860 398 PANTHER BNACNNG35730D PROTEIN 24 398 - -
Ssu1g2860 398 PANTHER FI19922P1-RELATED 24 398 IPR045315 GO:1990542
Ssu1g2860 398 MobiDBLite consensus disorder prediction 1 42 - -
Ssu1g2860 398 Pfam Mitochondrial carrier protein 42 178 IPR018108 -
Ssu1g2860 398 Pfam Mitochondrial carrier protein 306 392 IPR018108 -
Ssu1g2860 398 Pfam Mitochondrial carrier protein 189 289 IPR018108 -
Ssu1g2860 398 SUPERFAMILY Mitochondrial carrier 44 386 IPR023395 -
Ssu1g2860 398 Gene3D Mitochondrial carrier domain 123 396 IPR023395 -
Ssu1g2860 398 ProSiteProfiles Solute carrier (Solcar) repeat profile. 188 288 IPR018108 -
Ssu1g2860 398 ProSiteProfiles Solute carrier (Solcar) repeat profile. 302 390 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2860 Ssu-Chr1 75686182 75691583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2860 138 389 Organic Solute Cotransporters AT3G55640 27.132 7.54e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2860 K15119 - gmx:100778501 716.842