Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2855 ATGGGAGTTGTGACTGTTTCTAGCTCAGCTGCTCGGACTCCACTGGGATTGAATACAAATTTTTGCAGTCATCATCTGAAGAGACCTTTAACTGTAGCATTCAAAGGGGATAAACACAATGACTCAGCTTTGGTTGCAACTCAGGAGAAAATTCCTGTGCCCGTTGAAACGGCGAAGGCGCAGAAGAAAAGGATAGGGAAAACCAGCAAACTAGCTAAGAGAGAAAGAGTTGTCTTTGCGGAGGAAAGTTCTCCATCTTCCTTGGATGTGGACTACAATGAAGCTGCTGCCATGCTTGAAAATATATACAAACTCAGCCCTGCATCTGATACTGGTAATGCAGAATGTATAGATGGTAAAGTCAAGAGAGTCTCTAGGAGAGGGAAGAAGGTTGTTGATGAAAGTAAAGAAAAGGAGTTAAACAGTGATAGCGTGGTCAGAAACCAGAACAAGAGAGCTAAACGATTGAATCTTGATCAgagaatttcattaaaaaagaacaatagtGGGGACGTAGTCATTCCAACTCGAAAGAAAAGGCATGTTAAGAATAGAATTGAGAAGATTGAAGAACTCATTAGGGAATATTCAGTATCAACTGATTTTGTCAGTATGGACTGGAAAAAAACGAGAATACCTCCGGTTCTCTCATCTTCAGAGCATGCTTGGTTGTTCAAATTGATGCAACCTATGAAGGCACTGCTTCGAGTGAAAGAAGATTTACAGAAGGAACTAGCAAGAGAATCTGCAGATGGTGAACTAGCTGATGCAACAGACATGAGCATTGCTCAAGTAAAGAAGGCAATAGAGGTTGGTCAAGCTGCAAGAAACAAACTCATAAAGGTAATTTAA 852 0.3991 MGVVTVSSSAARTPLGLNTNFCSHHLKRPLTVAFKGDKHNDSALVATQEKIPVPVETAKAQKKRIGKTSKLAKRERVVFAEESSPSSLDVDYNEAAAMLENIYKLSPASDTGNAECIDGKVKRVSRRGKKVVDESKEKELNSDSVVRNQNKRAKRLNLDQRISLKKNNSGDVVIPTRKKRHVKNRIEKIEELIREYSVSTDFVSMDWKKTRIPPVLSSSEHAWLFKLMQPMKALLRVKEDLQKELARESADGELADATDMSIAQVKKAIEVGQAARNKLIKVI 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2855 283 PANTHER RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL 2 281 - -
Ssu1g2855 283 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 2 281 - -
Ssu1g2855 283 Coils Coil 231 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2855 Ssu-Chr1 75581680 75582744 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2855 K03093 - gmx:100812580 440.654