Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2854 atgagtaaattatataaaaaatggtgGTCATATCTTTTGCAGCACAATCTCCGGCTTGTCCTGTTTGTGATCAACAAATATTTTCCAGATTTTGCTAGTGGCCCTAGGTTTCAAGATCTTTGTCAGGCAGGAGTTAAGGGACTTATGACAGCAATTGATCGTTTTGAGCCAAACAGAAGATTTCGGCTATCAACATATAGTTTGTTTTGGATAAGACATGCTATCATTCGTTCAATGACCCTCTCAAGCTTCACACGTGTTCCCTTTGGACTTGAATCGGTTCGAGCAGAGATCCAAAAGGCTAAAACTGAGTTAACATTTGAGCTTCAGAGGTCACCAACAGAGGAAGAAATAATAGAAAGAGTTAATATATCCCCTGAAAGGTACCATGACGTAATGAAGGCATCAAAATCCATTCTTTCGCTGAACTCGAGACATACTACCACACAAGAGGAGTTCATTAATGGGATcattgatgatgatggtgataatAGGAGGCAACCTGCTCTACGAAGGCTTGCTCTTGATGATGTGcTTGATTCCCTGAAGCCCAAGGAAAGCTTGGTGATCAGACAGAGATTTGGACTTGATGGCAAGCGTGACAGAACGTTGGGAGAAATCGCTGGGAACTTGAATATATCTAGGGAAATGGTAAGAAAGCACGAAGTCAAGGCTCTTATGAAGCTCAAGCATTCAGCTCGATTGGATTATCTTCGTCGTTatgttgtataa 732 0.3893 MSKLYKKWWSYLLQHNLRLVLFVINKYFPDFASGPRFQDLCQAGVKGLMTAIDRFEPNRRFRLSTYSLFWIRHAIIRSMTLSSFTRVPFGLESVRAEIQKAKTELTFELQRSPTEEEIIERVNISPERYHDVMKASKSILSLNSRHTTTQEEFINGIIDDDGDNRRQPALRRLALDDVLDSLKPKESLVIRQRFGLDGKRDRTLGEIAGNLNISREMVRKHEVKALMKLKHSARLDYLRRYVV 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2854 243 Pfam Sigma-70 region 3 96 163 IPR007624 GO:0003700|GO:0006352|GO:0006355
Ssu1g2854 243 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 169 241 IPR013324 -
Ssu1g2854 243 Pfam Sigma-70, region 4 178 231 IPR007630 GO:0003700|GO:0006352|GO:0006355
Ssu1g2854 243 Gene3D - 166 243 IPR036388 -
Ssu1g2854 243 Coils Coil 91 111 - -
Ssu1g2854 243 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 12 243 - -
Ssu1g2854 243 Pfam Sigma-70 region 2 12 78 IPR007627 GO:0003700|GO:0006352|GO:0006355
Ssu1g2854 243 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 87 160 IPR013324 -
Ssu1g2854 243 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 9 231 IPR014284 GO:0003700|GO:0006352|GO:0006355
Ssu1g2854 243 PRINTS Major sigma-70 factor signature 63 71 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ssu1g2854 243 PRINTS Major sigma-70 factor signature 218 229 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ssu1g2854 243 PRINTS Major sigma-70 factor signature 39 52 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ssu1g2854 243 PRINTS Major sigma-70 factor signature 182 194 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ssu1g2854 243 PRINTS Major sigma-70 factor signature 203 218 IPR000943 GO:0003700|GO:0006352|GO:0006355
Ssu1g2854 243 PANTHER RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL 12 243 - -
Ssu1g2854 243 Gene3D RNA Polymerase Primary Sigma Factor 4 83 - -
Ssu1g2854 243 Gene3D - 85 137 IPR036388 -
Ssu1g2854 243 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 12 79 IPR013325 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2854 Ssu-Chr1 75579677 75581529 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2854 K03093 - gmx:100812580 411.379