Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2848 ATGAAGAGGGGGAGTGACTTTATTCCAAACGGTCTCTTGTCTAGTAAAGCACCCTCTGTTGCCAAGGTGCTTGACCAGGATAGATGGTCACAAGCTGAAGCTAGAACTGCAGAGCTGCTTGCACATATTCAGCCCAACCAAACATCAGAAGGACGTCGAAATGCCGTGGTGTCTTACCTACGATGCCTGATCATGGATTGTGTCCCTTGCCAGGTATTTACGGTTGGGTCCGTACCGTTGAAGACCTATTTACCTGATGGGGATATTGATCTAACAGCGTTTGGTGATAATCAACATTCGGAAGACAGTCTGGTCCAAGATGTAATGTACACTTtagaaagggaagagaagaatGAGGATGCGGAATTTCATGTGAAAGAGGTTCAGTATATTGAGGCAGAGGTGAAGATTATAAAGTGTTTAGTCGAAAACTTTGTAGTTGACATATCTTTCAATCAGATTGGTGGTTTGGGTACACTTTGTTTTCTTGAGGAGGTTGACTATTTGATAAAACAGAATCATTTATTCAAGCGAAGTATTATACTGATAAAAGCTTGGTGTTTCTATGAGAGCCGCATCCTGGGATCTCACCATGGACTCATTTCAACCTATGCAGTGGAAACTTtagtcatatatttatttcatgtttacAGCAATACATTTGCTGGACCACTTGAGGTACTTCTTCGATTTCTGGACTTCTTTAGTAAATTTGACTGGAGTAAATATTGCGTTAGCTTGAGGGGACCTGTGCCTATTAGTTCACTTCCTAATATGAAAGCTGAGCCTCCACGTAAGAATTGCCAACCGTTGCTGCTTAGTAAACAATTTCTTTATGTTTGCGAGTCCTCCTATGGTGTTATGCCTAGCAGCCAAGAACTCAAAGAGAAACCTTTTGTTTCCAAATACCTCAATATTGTAGATCCTTTGCGTGCTAACAACAACTTGGGGCGTAGCATCCATAAGGGTAACTTCTGTAGGATAAAGAGTGCAATTGCTTTTGGTGCTAAGCAGATAGAGAGATTGCTGGATTGCCCTGAAGATAATTTAATAGctgaatttgatttgtttttcaaGAACACATGGGATAGAAATGGGAATGGGTACTGGCTTGATACACGCAGTTATAATCTTTATATAAGGAAGAACAATGTTACTAGTCATGAATCTGAGGTTAAGCAGGCTCAAGCTTCTCATGGTATTTACCAAAATCCTGCTAACCATTCAGAAGAATCAAAGCAAATGTTTGGAAACTCTTATGTATCTGCTGCTTCTCAAACTTGGAGCTCAAGGAATAACGGCATTTTCACTGGTACAATGACCTCTGACATAGAGCATACAAATACCATGAAGAATGCACTTGATAATAGAGGCCAAAGTCCTATATATTCATCACATGAAGTTTATGACATGCATCACTTTCCTgggttttatactggttcagaATTTGCTCATTTGTGTAGTGAAGCTCCAACTCAGCATTACCATAACACCAGAATTTCATCTGAAAATCAGCAATCTTTTGGGCAGATTTCATATGATTGGAGAAATGAATATGCATTTGACCCAGAAGATACTTCAAGTggttattattatgaaaatggcTTCGGTGCCAATGACGAAAATGTCTTTCCTGTTGATGAGGTAATGCTGATGCATCAGAAAGAGCATAATTTCCCTAACTTCAATGAATATCTGAAAGCACCAGTGAATGTGAATTCAAATACTGTATCTTTTCCACCCCCACCCACGCAAGCTTTAGCTTCAGGATACATGCATGAAAACTCGTTCGGGGTGCTTCCTGAAAATGTCCCTTCTTTTGAGTCCTTTTCAGGGCACAATATGCCTTGCTCTCAGGACACAGCTCCATTTCCTTCAGAATGGTTTCCAAGTCTGAGATCGACATTCTATGAGGAAGAACTTACTGAACCGGTTGATTATAATGTGTTAGTACCTCATTCAGATCATGTAAGGCAAATGGCTGTTAACAGTGGTTCCAACTCTGGTAATTCATCTTGGGAGACTGGTGCTACAATTTACACACCAAAAGATTATGTGGTAACGACTAACCAAAATTGGTTGAccagagaaaaaaatagtggtGATCCACCTCACAATAGAATCATAAATAAGGATGTGAACTCTAGAGCAAGATCTAGTTTCAAATCTGCATTGCTTTCAACCTCGAGGACCGGTCTTTCTTCCCCTAGTTTCTCAAGTGGATCATCTTTGAAGACTCCTCAACCTGATGGTGTCAGCAGAAAGCGGATTGGTCGATCAACTATAGGCACAGGCTTGCGTGAGAACACAAGTACTGAAGCTATTACTTCATATGTTCAAGCTCTTCAATTAGGTAGGAAAGTGCCAATGACTGTGCCTAATTCATCAGTTTCTGATCACACTCCTGTTCATGTTGCTCCTCCTGGTTCAAGTCAGAGAGCTGTTGATAACCGAAGATTGTTCCCAATTGCAGATGGTTCCAGTGGTCCATCATTTCAAGTTCCTACCATGTTCCCATTCCACAATGTTCCTACTGAGACTGAAACTACTTTTGCAGCCACCAATGATGAGCACATGGTTGCTGAGCTAGGCAATCTTTATCCACCTGAGCCAAATTTCAGTTTGGATTCTACTCAACATGTTAACCATACCAATCATGATGCAGCACATTCAGGGTACTTTGTGAAAGAAGGTTCTGACATTTTGGAGGGTGATTTTGAAAGCTATTGGGTGAATCTGCAATATGGAAGGTTTTGTAAGAATCCACAATCACAGGGGCCTTTGGCTAATCCTCCCTCTATTACACCGTCAATGCGTTCAAGGGGACAATTTCCATGGTATAGGAAACCTACTGGTGTCATGAACAGTATGGGGCATGTTCATACCCCAGTTCCCGTGATGCCATCTCGACGTGTTTCTCCCTTACTTCATGGGGATGCTAAAGAACGTGTTGGTTTTTGGATTCCAAGATTTAGTGAGGGGACTGGGACATACCTGCCAAACTCTACAAATTATCACCTGAGATTTTACAGGAGAAAGGGTCATCAAAAAAATCGTCATATCAAAGATGACACATATGAAATGAAGGATAATCATGGTGAAAGGGAAGAAAATTCGCATTTGAATTCAATGGAAAGGTTTCCCAGCCCTGGCCAGTTTTACGACAATTTTGAGAATCCAGGTTCAAATGAATCATCACCTCGAGGTGAAAGCTCACAGAGTGGTATTAGTACGGTGGCAAATTTTGGAAGAGATTCTAAAAGTACTTCTACATCAACCTCCATCATCAAAAATCCTTGGGGTTCAACAAGAGGGACACCCGGTCAATAA 3330 0.3976 MKRGSDFIPNGLLSSKAPSVAKVLDQDRWSQAEARTAELLAHIQPNQTSEGRRNAVVSYLRCLIMDCVPCQVFTVGSVPLKTYLPDGDIDLTAFGDNQHSEDSLVQDVMYTLEREEKNEDAEFHVKEVQYIEAEVKIIKCLVENFVVDISFNQIGGLGTLCFLEEVDYLIKQNHLFKRSIILIKAWCFYESRILGSHHGLISTYAVETLVIYLFHVYSNTFAGPLEVLLRFLDFFSKFDWSKYCVSLRGPVPISSLPNMKAEPPRKNCQPLLLSKQFLYVCESSYGVMPSSQELKEKPFVSKYLNIVDPLRANNNLGRSIHKGNFCRIKSAIAFGAKQIERLLDCPEDNLIAEFDLFFKNTWDRNGNGYWLDTRSYNLYIRKNNVTSHESEVKQAQASHGIYQNPANHSEESKQMFGNSYVSAASQTWSSRNNGIFTGTMTSDIEHTNTMKNALDNRGQSPIYSSHEVYDMHHFPGFYTGSEFAHLCSEAPTQHYHNTRISSENQQSFGQISYDWRNEYAFDPEDTSSGYYYENGFGANDENVFPVDEVMLMHQKEHNFPNFNEYLKAPVNVNSNTVSFPPPPTQALASGYMHENSFGVLPENVPSFESFSGHNMPCSQDTAPFPSEWFPSLRSTFYEEELTEPVDYNVLVPHSDHVRQMAVNSGSNSGNSSWETGATIYTPKDYVVTTNQNWLTREKNSGDPPHNRIINKDVNSRARSSFKSALLSTSRTGLSSPSFSSGSSLKTPQPDGVSRKRIGRSTIGTGLRENTSTEAITSYVQALQLGRKVPMTVPNSSVSDHTPVHVAPPGSSQRAVDNRRLFPIADGSSGPSFQVPTMFPFHNVPTETETTFAATNDEHMVAELGNLYPPEPNFSLDSTQHVNHTNHDAAHSGYFVKEGSDILEGDFESYWVNLQYGRFCKNPQSQGPLANPPSITPSMRSRGQFPWYRKPTGVMNSMGHVHTPVPVMPSRRVSPLLHGDAKERVGFWIPRFSEGTGTYLPNSTNYHLRFYRRKGHQKNRHIKDDTYEMKDNHGEREENSHLNSMERFPSPGQFYDNFENPGSNESSPRGESSQSGISTVANFGRDSKSTSTSTSIIKNPWGSTRGTPGQ 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2848 1109 CDD NT_PAP_TUTase 52 157 - -
Ssu1g2848 1109 MobiDBLite consensus disorder prediction 1055 1109 - -
Ssu1g2848 1109 SUPERFAMILY Nucleotidyltransferase 39 193 IPR043519 -
Ssu1g2848 1109 PANTHER - 4 431 - -
Ssu1g2848 1109 Gene3D - 156 353 - -
Ssu1g2848 1109 MobiDBLite consensus disorder prediction 727 767 - -
Ssu1g2848 1109 PANTHER PAP/OAS1 SUBSTRATE-BINDING DOMAIN SUPERFAMILY 493 649 - -
Ssu1g2848 1109 PANTHER PAP/OAS1 SUBSTRATE-BINDING DOMAIN SUPERFAMILY 4 431 - -
Ssu1g2848 1109 PANTHER - 747 1059 - -
Ssu1g2848 1109 Gene3D Beta Polymerase, domain 2 45 155 IPR043519 -
Ssu1g2848 1109 MobiDBLite consensus disorder prediction 727 749 - -
Ssu1g2848 1109 PANTHER PAP/OAS1 SUBSTRATE-BINDING DOMAIN SUPERFAMILY 747 1059 - -
Ssu1g2848 1109 PANTHER - 493 649 - -
Ssu1g2848 1109 SUPERFAMILY PAP/OAS1 substrate-binding domain 175 345 - -
Ssu1g2848 1109 MobiDBLite consensus disorder prediction 793 813 - -
Ssu1g2848 1109 MobiDBLite consensus disorder prediction 1013 1109 - -
Ssu1g2848 1109 MobiDBLite consensus disorder prediction 695 714 - -
Ssu1g2848 1109 MobiDBLite consensus disorder prediction 1019 1042 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2848 Ssu-Chr1 75409727 75417380 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2848 - - ccaj:109797485 1455.27