Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2667 ATGCTCCACAACAAGTCCTTCGTCAAGAAAACCAAAGCCGGCAAAGTCATGAAGCAAGTGCGGGAGCACTACCTGCGTGACGATATATACTGCGGCGCACCGTTTTGCACCGTTTGCGATTCTTCCGGTGCTCGCCTCGGTGCTTCCGCTTCCACCATTCTCGTTGTCGACACCAATGTCGTTCTCAACCAGATTGATTTGCTGGAGAATCCGACGATTGACGATGTTGTGGTGTTGTCCATCGTGCTGGAAGAGGTTAAGAACAAGAACGTGGCTGTTTACAACCGAATAAGAGCTATCTGTAGCAATTCCATGAggaaattctttgttttttccaATGAGTACCATAGGGATACATATGTTAAAGAAATGAGTGGGGAAACTAAAAATGATAGGAATGATAGAGCTATCCGAGTGGCTACTCAGTGGTATCAGAATCATCTTGGTGGTGCAGTAAAGGTTTTGCTTATAACTAATGATAAAGAGAACAAAAGGAAGGCTAGTGAGGAGGGCATTTTTGCTGAAACAGTTGAGTCATACGTGAAGTCTTTGGATCGACCTGATTTACTTGATCTGCTTGTCCGGCCTGCATCTGAAGATGTGGACATGGAAGAGGTTGAAGATCTTAGACCGTCCAAGAGGAAAGTCATCTATCATGAGCATAAGCCGATGTCAGAAATTACTGCTGGTTTGCATCATGGAATATATCATCAAGGGAAACTTCGTGTAAACCGTTATAATCCATTTGAAGCATATGTTGGGAGTGAGAGCATTGGTGATGAAATAGTTATTTATGGGCGCTCAAACATGAATCGAGCATTTGATGGGGATATTGTTGCTGCTGAACTTTTGCCTCAGGACCAGTGGCAAGAAGTCTTGTCTCTATCTATAGCCGGTGAagAAGATGAGGATGACGATGAAGATGTTCATCTAGCTCCAAATAGTGCTGCTGATGCACCTAGAACTATTCCTCAGCAGGGTTCTTCTGAACAAGTAAATGTTGTGCCCAGTCGTCCTTCTGGTCGTATTGTTGGCATTATAAAGAGAAACTGGCATTCGTATTGTGGATCTTTGGAGCCAATGCCTATGCCTGCAGGGAGTGGTGGTATTGCCCATGCCTTGTTTGTCTCCAAAGATCGCAGAATTCCCAAGATTCGAATTCAAACCCGTCAACTTGAGAACCTTTTGGATAAGAGGATTATTGTGGCAGTTGATTCTTGGGATCGTCAGTCTCGATATCCATCAGGCCATTATGTGCGCACTATAGGGGAGATAGGTGATAGAGATACTGAAAGCGAGGTGGTTTTGatagaaaatgatataaatacaCGGCCATTCTCTTCACAAGTGTTGGCATGTTTGCCACCATTGCCGTGGTTAGTCTCTTCTGAAGATTTGTCTAATCCAATCAGGCAGGATTTGCGTCATCTGCGTGTCTTCAGTGTGGACCCTCCAGGCTGCAAGGATATTGATGATGCACTCCACTGTCTCGCTCTTCCAAATGGAAACTTTGAAGTTGGAGTTCATATTGCTGATGTGACAAATTTTGTTCATCCTGGCACTCACCTTGATGATGAGGCTGCACTAAGGGGTACATCTGTCTACCTTGTTGAGCGGCGGATAGACATGCTTCCCAAACCTCTTACGGAGGACATATGTTCTCTTCGTTCTGATGTGGAGAGGCTTGCATTCTCTGTCATATGGGAAATGACACCTGAAGCGGACATTATTTCCACCAGATACACAAAAAGTGTCATAAAATCTTCTGCAGCATTGTCTTATGTTGAAGCACAAGCGAGGATGGATGATAGTCGATTGATGGATCCGATTACTGCAGATTTGAGGAATATGAATAGTTTAGCTAAGAAAATGAGATTAAGGCGTATTGAGAGAGGAGCTTTGACTCTTGCATCTGCTgaagtcaaatttcaaattgaCACGGAGACTCATGACCCCCTTGATATTGGAATGTACCAGATCCGGGAGGCCAACCAAATGGTGGAGGAGTTTATGCTTGCTGCTAATGTTTCCGTTGCACAACAAATTCTTAAAACTTTTCCATTGTGCTCATTATTAAGGTTGCGTCATCCAACACCAACTAGAGAGATGCTTGAACCCTTGCTACGGACTGCTGCTGCAGTTGGCTTGCACTTGGATGTGTCGTCATCAAAAGCATTGGCTGATTCTCTTGACCATGCTGtgGGTGACGATCCATACTTCAATAAGTTAATCCGTATACTGGCAACTAGGTGCATGAGTCAggcAGTTTATTTCTGCAGTGGGGACCTAAGCCCTCCAGAATATCATCATTATGGGCTTGCAGCTCCTTTGTATACCCATTTCACATCACCTATAAGAAGATATGCAGATGTCATTGTGCACAGGCTACTTGCTGCTTCTTTAGGAATATCCAAGTTACCGTCTGTATTTCAAGACAGACTCCAGCTCACTAGTATTGCAGACAATTTAAATTATCGGCACAGGAATGCCCAGTATGCAGGGCGGGCATCTGTAGAGCTACATACTCTAATTTATTTCAGGAAGAGGCCTACAGACACAGAAGCTAGAATAGTGAAAATAAGATCTAATGgattttttgtgtttgttcccaaATATGGCATAGAAGGACCTGTATATTTGACAAAAGTGGAAAAGGGAAGTGGAGAATGGTATGTAGATGAGGAACAGCAGAAGATTAAAAAGATGGATGGTAGCCTTTCGTACAGCGTTTTGCAGACGGTCCAAATTCACATGGAGGTTGTGGAGCCTCAGCCTAACCGGCCAAAACTTCAGCTTACACTCATCTAG 2808 0.4281 MLHNKSFVKKTKAGKVMKQVREHYLRDDIYCGAPFCTVCDSSGARLGASASTILVVDTNVVLNQIDLLENPTIDDVVVLSIVLEEVKNKNVAVYNRIRAICSNSMRKFFVFSNEYHRDTYVKEMSGETKNDRNDRAIRVATQWYQNHLGGAVKVLLITNDKENKRKASEEGIFAETVESYVKSLDRPDLLDLLVRPASEDVDMEEVEDLRPSKRKVIYHEHKPMSEITAGLHHGIYHQGKLRVNRYNPFEAYVGSESIGDEIVIYGRSNMNRAFDGDIVAAELLPQDQWQEVLSLSIAGEEDEDDDEDVHLAPNSAADAPRTIPQQGSSEQVNVVPSRPSGRIVGIIKRNWHSYCGSLEPMPMPAGSGGIAHALFVSKDRRIPKIRIQTRQLENLLDKRIIVAVDSWDRQSRYPSGHYVRTIGEIGDRDTESEVVLIENDINTRPFSSQVLACLPPLPWLVSSEDLSNPIRQDLRHLRVFSVDPPGCKDIDDALHCLALPNGNFEVGVHIADVTNFVHPGTHLDDEAALRGTSVYLVERRIDMLPKPLTEDICSLRSDVERLAFSVIWEMTPEADIISTRYTKSVIKSSAALSYVEAQARMDDSRLMDPITADLRNMNSLAKKMRLRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAQQILKTFPLCSLLRLRHPTPTREMLEPLLRTAAAVGLHLDVSSSKALADSLDHAVGDDPYFNKLIRILATRCMSQAVYFCSGDLSPPEYHHYGLAAPLYTHFTSPIRRYADVIVHRLLAASLGISKLPSVFQDRLQLTSIADNLNYRHRNAQYAGRASVELHTLIYFRKRPTDTEARIVKIRSNGFFVFVPKYGIEGPVYLTKVEKGSGEWYVDEEQQKIKKMDGSLSYSVLQTVQIHMEVVEPQPNRPKLQLTLI 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2667 935 MobiDBLite consensus disorder prediction 319 336 - -
Ssu1g2667 935 Pfam PIN domain 54 177 IPR002716 -
Ssu1g2667 935 CDD PIN_Rrp44-like 9 180 - -
Ssu1g2667 935 Pfam Rrp44-like cold shock domain 220 309 IPR033771 -
Ssu1g2667 935 ProSitePatterns Ribonuclease II family signature. 770 794 IPR022966 -
Ssu1g2667 935 SUPERFAMILY Nucleic acid-binding proteins 852 931 IPR012340 -
Ssu1g2667 935 SMART PIN_9 52 165 IPR002716 -
Ssu1g2667 935 SUPERFAMILY PIN domain-like 53 186 IPR029060 -
Ssu1g2667 935 Pfam RNB domain 471 801 IPR001900 GO:0003723|GO:0004540
Ssu1g2667 935 PANTHER RIBONUCLEASE 3 935 - -
Ssu1g2667 935 Gene3D - 9 192 - -
Ssu1g2667 935 SMART RNB_2 471 803 IPR001900 GO:0003723|GO:0004540
Ssu1g2667 935 Pfam Dis3-like cold-shock domain 2 (CSD2) 373 440 IPR041505 -
Ssu1g2667 935 Pfam S1 domain 853 921 IPR033770 -
Ssu1g2667 935 Gene3D - 207 312 - -
Ssu1g2667 935 MobiDBLite consensus disorder prediction 300 336 - -
Ssu1g2667 935 SUPERFAMILY Nucleic acid-binding proteins 429 848 IPR012340 -
Ssu1g2667 935 Gene3D - 351 426 - -
Ssu1g2667 935 SUPERFAMILY Nucleic acid-binding proteins 215 423 IPR012340 -
Ssu1g2667 935 PANTHER EXOSOME COMPLEX EXONUCLEASE RRP44 3 935 - -
Ssu1g2667 935 Gene3D - 852 935 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2667 Ssu-Chr1 72407348 72423703 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2667 K12585 - gmx:100806652 1764.59