Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2661 ATGGCGAAGCAGAAACTTAGCAACACTTTTTTCGTGCACTTGGTGATTCTCTTCTTCTGTGCTTCCTCTTTATTGGTTTCAGCGAGAGTTGTGCCTCTCTTGCAGAGCTATGGGAACCCCATTTTCAGATCAAACTTTCACACTATTTACGACACTTCAAAGTACGGTGTGTTTCAACTGAGTAATGGGTTGGCTAAAACGCCTCAGATGGGATGGAATAGCTGGAACTTCTTTGCATGCAATATCAATGAAACGGTCATTAAGGAAACGGCTGATGCACTGGTATCCACAGGGTTGGCTGATTTAGGTTATGTGTATGTCAACATAGATGATTGCTGGTCTGCTGTGACAAGAAATCTGAAGGGCGAACTGGTTCCTGATCATAAGACATTTCCTTCAGGAATCAAAGCTCTAGCAGATTATGTACATGGAAAGGGACTCAAGCTTGGCATATATTCTGATGCTGGGGTTTTTACATGTCAAGTCCGGCCAGGATCGATTTTCCATGAAACTGGTGATGCAGATTTATTTGCCTCTTGGGGTGTAGATTATTTGAAGTATGACAATTGTTACAATCTGGGCATCCCTCCAGAAAAACGATATCCACCTATGCGTGATGCTCTCAATACGACTGGGCATAAGATTTTCTATTCAATCTGTGAATGGGGTGTTGATAACCCTGCATTGTGGGCAGACAAGGTTGGTAACAGTTGGCGCACAACTGAAGACATCAATGACTCATGGGCAAGCATGACAACCATTGCTGATCTTAATGATAAGTGGGCTGCATATGCTGGTCCTGGAGGATGGAATGACCCAGATATGTTGGAAGTTGGCAACGGTGGCATGACTTACCAGGAATACCGTGCTCACTTCAGTATCTGGGCTTTAGCAAAGGCACCTCTATTGGTTGGCTGTGATGTAAGAAATTTGACTGTTGAAAcacttgagattttgagcaataAAGAAGTCATTGCCATCAATCAAGACTCACTTGGAGTCCAGGGAAGGAAAGCTCAAGCTGCTGGAATAGATGGTTGCAGACAGGTTTGGGCAGGTCCTTTGTCAGGAAATCGATTGGTTGTTGCTCTCTGGAATCGGTGCTCACAAGTTGCCACTATAACAGCTTCATGGGAAGCACTTGGGCTTGAATCTAGTGTTCATGTTTCTGTGAGGGATTTGTGGCAGCACAAGGTAGTAACTAGAGATGCTGTGTCATCATTCAGTGCTCGAGTTGATATCCACGACTGTCAACTGTACATTTTCACTCCACTTATAGTGTCTCACTCTGTAGAGTAA 1299 0.4342 MAKQKLSNTFFVHLVILFFCASSLLVSARVVPLLQSYGNPIFRSNFHTIYDTSKYGVFQLSNGLAKTPQMGWNSWNFFACNINETVIKETADALVSTGLADLGYVYVNIDDCWSAVTRNLKGELVPDHKTFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSIFHETGDADLFASWGVDYLKYDNCYNLGIPPEKRYPPMRDALNTTGHKIFYSICEWGVDNPALWADKVGNSWRTTEDINDSWASMTTIADLNDKWAAYAGPGGWNDPDMLEVGNGGMTYQEYRAHFSIWALAKAPLLVGCDVRNLTVETLEILSNKEVIAINQDSLGVQGRKAQAAGIDGCRQVWAGPLSGNRLVVALWNRCSQVATITASWEALGLESSVHVSVRDLWQHKVVTRDAVSSFSARVDIHDCQLYIFTPLIVSHSVE 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2661 432 Pfam Alpha galactosidase A 67 330 IPR002241 GO:0004553|GO:0005975
Ssu1g2661 432 SUPERFAMILY (Trans)glycosidases 60 330 IPR017853 -
Ssu1g2661 432 Pfam Alpha galactosidase C-terminal beta sandwich domain 346 421 IPR041233 -
Ssu1g2661 432 CDD GH27 68 330 IPR002241 GO:0004553|GO:0005975
Ssu1g2661 432 Gene3D - 333 424 IPR013780 -
Ssu1g2661 432 SUPERFAMILY Glycosyl hydrolase domain 325 423 - -
Ssu1g2661 432 ProSitePatterns Alpha-galactosidase signature. 103 119 IPR000111 GO:0004553|GO:0005975
Ssu1g2661 432 PANTHER ALPHA-GALACTOSIDASE 3 44 423 - -
Ssu1g2661 432 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 44 423 IPR002241 GO:0004553|GO:0005975
Ssu1g2661 432 Gene3D Aldolase class I 60 332 IPR013785 -
Ssu1g2661 432 PRINTS Glycosyl hydrolase family 27 signature 98 113 IPR002241 GO:0004553|GO:0005975
Ssu1g2661 432 PRINTS Glycosyl hydrolase family 27 signature 265 284 IPR002241 GO:0004553|GO:0005975
Ssu1g2661 432 PRINTS Glycosyl hydrolase family 27 signature 62 81 IPR002241 GO:0004553|GO:0005975
Ssu1g2661 432 PRINTS Glycosyl hydrolase family 27 signature 200 218 IPR002241 GO:0004553|GO:0005975
Ssu1g2661 432 PRINTS Glycosyl hydrolase family 27 signature 139 160 IPR002241 GO:0004553|GO:0005975
Ssu1g2661 432 PRINTS Glycosyl hydrolase family 27 signature 173 190 IPR002241 GO:0004553|GO:0005975
Ssu1g2661 432 PRINTS Glycosyl hydrolase family 27 signature 286 307 IPR002241 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2661 Ssu-Chr1 72283847 72290148 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2661 1 430 Glycoside Hydrolase AT3G56310 70.345 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2661 K07407 - gmx:100784072 823.157