Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2658 ATGACCCACGAATTTCCTGTTAAGTTCATGAACATCTTGGACCCTCTAAGAAATGACAACAACCTAGGCCGTAGTGTCAACATTGCCAGTCTACATCGATTAAGATTTGCTCTTTCCTACGGTGCTCGAAAGCTTAAGCAGATCCTGACACTTCCAGGAGAAAACATGGGTGCAGCACTTGAGAAGTTTTTCTTCTGCACTCTGGACAGGAATGGGAAAGGAGAAAGGGCAGATGTCGACATTCCTGTTTCTCCATTTGGTACTGGAAGATCTGAAGAGTCTGTCCTCTGTGGAGATTGTGACAGTTATTATGGTGGCTTACAATATATTCAGCTGTATCGTAATTATGCCATGCCAGAAACTGTACATTCCAGTTCTCCATCGTCATCTTCTCAGGATGATATCCTTGCACTATCGACGCAGCAAAATTGGAGTGAAGGTGATGCCCTTGCACTCTTGACACAGCAAAACTGGAGTGAAGGTGACGCCCTTGCACTCTCGACGCAGCAAAGCTGGAGTATGTTTTATCAAAGTGGTACTGAGGTATATATCCCCGGACAGACACTCTATCATCCAACTTACAGCCTTGAAGAAGGAGGGAAATCACGAGGAACAGGCACATTTATACCTGACTTGAATTATAATTCCTACTGGGATATAGGTGCAAAGACGATCAGGCCAAGGAGACTTCCTTCTGCAAAGCGCAATGCATTGCCCAAATCACCTCCAAAGGAGCAACAAGCGGAGGAGGTTCATTCTGAGACTGACATGAATGGAAattcaaagcagtttgagctctTAAATGAAGATATTCCCGTTCTTCCATGCATTCGCAAGGCTACACTGCCAACACAAGCCCAAGAGTCTGCTCCATTGGCAAAGGTTCATTCTGAGACAGACAGGGATGGTAATTCGAGGTTGTCTGAGCTCTCAAATGAAGATTTTCCCCTTCTTCCATGCATTCACAAGGCTATATCGCCAACACAAGCCCATGAGTCTGCTCCGTTATCAAAGGTTCTTTCTGAGACAGACAAGAATGACAATTCAAGGTTGTTTAAGCTCTCAAATGAAGATTTCCCCCTTCTTCCAAAGGTTCGTTCTGAGACACACATGGATGGTAATTCAAGGTCGTTTGAGCTCTCAAAGGAAGATTTCCCTCTTCTTCCAAGCACTCGCAAGATCATCACATCAGAGTCTGCTCAGTTAACAAAGCAAGCCAAGAGATCCCCATCCTCTAAACTGAAAAATATTGCGTTCGGAACTTACAAGAAGTCACAGTCACTGAGAGAACCAAGTTTGTCAACAaaggatgaaaaagaagattctgGTGTTTCATTATCTCAGGACACTGTGCTGATAGTTCCGAAGGTAGCAGTGGAGAGGAAAGAGGAATCTCCCGAGAGCAATGAGAAGATGGTTTGA 1422 0.4332 MTHEFPVKFMNILDPLRNDNNLGRSVNIASLHRLRFALSYGARKLKQILTLPGENMGAALEKFFFCTLDRNGKGERADVDIPVSPFGTGRSEESVLCGDCDSYYGGLQYIQLYRNYAMPETVHSSSPSSSSQDDILALSTQQNWSEGDALALLTQQNWSEGDALALSTQQSWSMFYQSGTEVYIPGQTLYHPTYSLEEGGKSRGTGTFIPDLNYNSYWDIGAKTIRPRRLPSAKRNALPKSPPKEQQAEEVHSETDMNGNSKQFELLNEDIPVLPCIRKATLPTQAQESAPLAKVHSETDRDGNSRLSELSNEDFPLLPCIHKAISPTQAHESAPLSKVLSETDKNDNSRLFKLSNEDFPLLPKVRSETHMDGNSRSFELSKEDFPLLPSTRKIITSESAQLTKQAKRSPSSKLKNIAFGTYKKSQSLREPSLSTKDEKEDSGVSLSQDTVLIVPKVAVERKEESPESNEKMV 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2658 473 MobiDBLite consensus disorder prediction 294 308 - -
Ssu1g2658 473 SUPERFAMILY PAP/OAS1 substrate-binding domain 8 51 - -
Ssu1g2658 473 PANTHER PAP/OAS1 SUBSTRATE-BINDING DOMAIN SUPERFAMILY 1 159 - -
Ssu1g2658 473 PANTHER PAP/OAS1 SUBSTRATE-BINDING DOMAIN SUPERFAMILY 147 313 - -
Ssu1g2658 473 MobiDBLite consensus disorder prediction 399 429 - -
Ssu1g2658 473 PANTHER PAP/OAS1 SUBSTRATE-BINDING DOMAIN SUPERFAMILY 304 446 - -
Ssu1g2658 473 PANTHER NUCLEOTIDYLTRANSFERASE DOMAIN PROTEIN 304 446 - -
Ssu1g2658 473 MobiDBLite consensus disorder prediction 229 256 - -
Ssu1g2658 473 PANTHER NUCLEOTIDYLTRANSFERASE DOMAIN PROTEIN 1 159 - -
Ssu1g2658 473 PANTHER NUCLEOTIDYLTRANSFERASE DOMAIN PROTEIN 147 313 - -
Ssu1g2658 473 MobiDBLite consensus disorder prediction 399 447 - -
Ssu1g2658 473 MobiDBLite consensus disorder prediction 430 444 - -
Ssu1g2658 473 MobiDBLite consensus disorder prediction 285 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2658 Ssu-Chr1 72265621 72267530 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2658 - - pvu:PHAVU_009G141900g 584.719