Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2653 ATGGGCGAAGGAGAGAAATTTCAGTTGGGAACTGTTGGCGCGTTGAGTCTGTCCGTGATGTCATCAGTGTCGATTGTGATTTGCAATAAGGCGTTGATGAGCACACTACATTTCATTTTCGCTACAACTTTGACAAGTTGGCATCTTCTTGTAACATTTTGTTCCCTTCATGTGGCactaaaaatgagattttttgagCACAAACCTTTTGAGCAAAAAGCTGTGATGGGATTCGGAATTCTTAATGGAATCTCAATTggacttttaaatttgagcttggGCTTCAACTCTGTTGGTTTctatcaaATGACTAAGCTGGCAATTATCCCATGTACTATTTTGTTGGAGATCCTTTTTCTTGGGAAGAAATTCAGTAGAAGAATACAATTTTCCCTTCTGGTCCTCCTTCTGGGTGTTGGAATTGCAACAGTTACTGATTTGCAGCTCAATGCTTTAGGCTCTTTCTTATCTTTGCTAGCAGTGATTACAACATGCGTTGCTCAAATTATGACAAATACCATTCAGAAGAAGTTTAAGGTTTCTTCTACCCAGCTTCTATATCAATCATGCCCATATCAAGCAGCTACCTTGTTAATCTCTGGAccatatttggataaacttttgaCCAACCTAAATGTTTTTACTTTCAAATACACAACACAAGTGATGATAGTCATTGTTCTTTCATGCCTAATCTCTATCGCTGTGaattttagtacatttcttGTAATTGGAAAAACATCTCCAGTCACCTATCAAGTTCTTGGGCATCTGAAGACATGCCTTGTATTGGCTTTTGGATATATTATTGTCCATGACCCTTTCAATTGGAGGAACATACTAGGGATTTTGGTAGCCATGGTTGGGATGCTTCTATATTCCTACTATTGTGTTCTTGAGAGTCAACAAAAACTAGCTGAAGCTCCTGCACAAGTGTCAcatGCAAGAGAAGGTGAATCTGAGACTCTTATTAATGTGGAAAATGGAAGTACAGTCTTGAGCAAAAGACCCCTTGTCTGGagcaaagaaaaagattag 1038 0.3555 MGEGEKFQLGTVGALSLSVMSSVSIVICNKALMSTLHFIFATTLTSWHLLVTFCSLHVALKMRFFEHKPFEQKAVMGFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLEILFLGKKFSRRIQFSLLVLLLGVGIATVTDLQLNALGSFLSLLAVITTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQAATLLISGPYLDKLLTNLNVFTFKYTTQVMIVIVLSCLISIAVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYIIVHDPFNWRNILGILVAMVGMLLYSYYCVLESQQKLAEAPAQVSHAREGESETLINVENGSTVLSKRPLVWSKEKD 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2653 345 PANTHER SOLUTE CARRIER FAMILY 35 2 324 - -
Ssu1g2653 345 PANTHER NUCLEOTIDE/SUGAR TRANSPORTER FAMILY PROTEIN 2 324 - -
Ssu1g2653 345 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 144 - -
Ssu1g2653 345 SUPERFAMILY Multidrug resistance efflux transporter EmrE 218 294 - -
Ssu1g2653 345 Pfam Triose-phosphate Transporter family 21 294 IPR004853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2653 Ssu-Chr1 72087268 72091295 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2653 22 328 Organic Solute Cotransporters AT1G77610 24.843 1.89e-22 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2653 K15285 - gmx:100786535 590.882