Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2652 ATGTTGGCTTTCTCCAAGTTCAGGAAAGCAGCGGAGATCTCCTGTGCATTCCGGCGAAACCCGAAGCCTCCCACACACCTCCGAAGATTCTCCGTTCCATCCGAGGAACGCGTCTCTCCAACCCCGCAACTGCCTCTTCGTTTCTGCATCTGGGTGGCGCTCAAGTTCGAGACCTTTTCCGCCCACGACGACTACTGCAACTTGGTGAGCCAGGTCCTTTGCTCCAACAACTGGTTTTCCCTTTACTGGGAAGGCCTCGAGCTTCTCAAGAAATCTGGGGTTTTGATAACTTCCGATTCGGTTAGAGCTTTGATTGGGGCGTATTGGCAAGTGGGTCTCGCCGAGAAGGCCATAGAGTCGTTTGGTAGAATGAGTGAGATGGGTTGCAAGCCCGATAGTCATGCGTATGACACCATTTTGGATATTGCGTTGAAGAAGGAGTTGTTTGTGTTGGCCCTCGCAGTGTATAATTTGATGCTTAAGTCCAGTTGTTGTCCTACTGAGATTACTTATAACATGTTGATTGATGGGTTTTGTAGAAGTGATAATGTTAAGGGTGCGCTTGAGATGCTCGACGAGATGAGCCAAAGGGATATAGTGCCGAGTGCTATAACGTTTACCGCTATTTTTTCTGGGCTGTGTCATGGGAAGAGGGTAGATGAGGCACACAGGTTGTTTAATGTGATGAAAGAAAGAGGGTGCCAGCCTGATTTGATGTCTTATGATGTTTTGATTAATGGGTATTGCAAGTTGGGGAGGTTGGAAGAGGCCATTTCGTTTCTGCGGTTGTTGGAGAGAGATGGGCTTGCCCTTGGACTAAAGGGCTATAGTTCTCTGATTGCTGGCTTTTTTAGGGCAAGGAGATACAATGAAGCGCATGCGTGGTATGGAAGGACGTTTAAGGAGGGTATTGTGCCGGATGTTGTTTTGTACACCATTATGATACGTGGTTTGTCAAGCGAGGGCAGGGTTGGTGAAGCTGTCAAGATGTTGGGTGAGATGACCCAGAGAGGCTTAGTTCCTGATGCTGTTTGTTACAATGAAGTTATTAAAGGTCTCTGTGACGTTGGTCTTTTGGATCGAGCACGATCTCTGCAACTTGAGATTTCTGAGCATGAATGGTTTCATAATGCTTGCACGCATACCATTCTTATCTGTGACTTGTGTAAGAAAGGAATGGTTGGCAAGGCACAGGAAATATTTAATCAGATGGAGAAGCTTGGATGTTTACCCTCAGTTGTGACCTTCAATGCTCTTATGGATGGACTGTGCAAGGCTGGTCAACTTGAGGAGGCACACCTTTTATTGTACAAGATGGAGGTTGGGAGAAGTCCTTCATTGTTTTTCCGGCTTTCTCAGGGTTCTGATCAGGTTTTAGATAGCGTTAGTCTCCAAAAAAAGGTCGAGCAAATGTGTGAGGCTGGACAAATTTTGGATGCATACAAGTTTCTCATACAACTTGCTGATAGTGGGGTTATGCCTGACATTGTGACATACAACGTTCTAATCAACGGCTTTTGCAAGGCTTCTAAGATCAATGGTGCTTTAAAGCTTTTCAAGGATATGCAAAACAAGGGGCTCGCACCTAACTCTGTTACTTATGGGACACTTATTGATGGGCTTTTCAGGGTTGGCGGAGAAGAGGATGCGTTTAAGATTCATGAGCATATGTTGAAGCATGGGTGTGAACCTAGCTTTGAAGTCTATAGAGCACTTATGACTTGGTTGTGTAGAAAGAGGAAGGTCTCTCAGGCCTTCAGTCTTTATTTGGAATATTTGAAGAACCTTCGCAGACGGGAAGATGATTCAATCAATGCTTTGGAGGAATATTTTCTCAAAGGAGAAGTGGAACAGGCATTTCGATGTTTACTAGAACTGGACTTCAGGTTTAGAGATTTTGATTTAGCTCCATATACAATTCTACTTATTGGATTTTGTCAGGCAGAAAAAGTAGATGaagcattaattatattttctgttCTTGATAAGTTCAGTATCAATATCAATCCTACAAGTTGTGTACATTTGATCAAAGGTCTCTGTGCAAAAGGAAGGCTGGATGATGCAGTAGACATCTTCCTTTACACTCTTGACAAAGGTTTTGAGTTGAAGTCAAGAGTTTGTGAGCTGCTCCTCAAGTGTCTCATTCTTTCCCAAGATAAAAAGGAGTATGCTATTGATCTTGTTCATAGGATGAAGTCTACTggatatcatttaaataatttggttGTTGCAGAACGCATCGTGTACAGAGCAGGACAAGCAATACAAATTGATTCTCACGAGAGATTAAATAACACTGACTGA 2307 0.4317 MLAFSKFRKAAEISCAFRRNPKPPTHLRRFSVPSEERVSPTPQLPLRFCIWVALKFETFSAHDDYCNLVSQVLCSNNWFSLYWEGLELLKKSGVLITSDSVRALIGAYWQVGLAEKAIESFGRMSEMGCKPDSHAYDTILDIALKKELFVLALAVYNLMLKSSCCPTEITYNMLIDGFCRSDNVKGALEMLDEMSQRDIVPSAITFTAIFSGLCHGKRVDEAHRLFNVMKERGCQPDLMSYDVLINGYCKLGRLEEAISFLRLLERDGLALGLKGYSSLIAGFFRARRYNEAHAWYGRTFKEGIVPDVVLYTIMIRGLSSEGRVGEAVKMLGEMTQRGLVPDAVCYNEVIKGLCDVGLLDRARSLQLEISEHEWFHNACTHTILICDLCKKGMVGKAQEIFNQMEKLGCLPSVVTFNALMDGLCKAGQLEEAHLLLYKMEVGRSPSLFFRLSQGSDQVLDSVSLQKKVEQMCEAGQILDAYKFLIQLADSGVMPDIVTYNVLINGFCKASKINGALKLFKDMQNKGLAPNSVTYGTLIDGLFRVGGEEDAFKIHEHMLKHGCEPSFEVYRALMTWLCRKRKVSQAFSLYLEYLKNLRRREDDSINALEEYFLKGEVEQAFRCLLELDFRFRDFDLAPYTILLIGFCQAEKVDEALIIFSVLDKFSININPTSCVHLIKGLCAKGRLDDAVDIFLYTLDKGFELKSRVCELLLKCLILSQDKKEYAIDLVHRMKSTGYHLNNLVVAERIVYRAGQAIQIDSHERLNNTD 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2652 768 Gene3D Tetratricopeptide repeat domain 367 441 IPR011990 GO:0005515
Ssu1g2652 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 669 703 IPR002885 -
Ssu1g2652 768 Pfam PPR repeat family 166 215 IPR002885 -
Ssu1g2652 768 Pfam PPR repeat family 377 425 IPR002885 -
Ssu1g2652 768 Pfam PPR repeat family 494 542 IPR002885 -
Ssu1g2652 768 Pfam PPR repeat family 306 355 IPR002885 -
Ssu1g2652 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Ssu1g2652 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 446 IPR002885 -
Ssu1g2652 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 131 IPR002885 -
Ssu1g2652 768 Pfam PPR repeat 638 659 IPR002885 -
Ssu1g2652 768 Pfam PPR repeat 276 303 IPR002885 -
Ssu1g2652 768 Pfam PPR repeat 103 129 IPR002885 -
Ssu1g2652 768 Pfam PPR repeat 675 695 IPR002885 -
Ssu1g2652 768 Pfam PPR repeat 568 591 IPR002885 -
Ssu1g2652 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
Ssu1g2652 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 530 564 IPR002885 -
Ssu1g2652 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 377 411 IPR002885 -
Ssu1g2652 768 TIGRFAM PPR: pentatricopeptide repeat domain 240 269 IPR002885 -
Ssu1g2652 768 TIGRFAM PPR: pentatricopeptide repeat domain 169 202 IPR002885 -
Ssu1g2652 768 TIGRFAM PPR: pentatricopeptide repeat domain 379 412 IPR002885 -
Ssu1g2652 768 TIGRFAM PPR: pentatricopeptide repeat domain 414 440 IPR002885 -
Ssu1g2652 768 TIGRFAM PPR: pentatricopeptide repeat domain 276 308 IPR002885 -
Ssu1g2652 768 TIGRFAM PPR: pentatricopeptide repeat domain 497 530 IPR002885 -
Ssu1g2652 768 TIGRFAM PPR: pentatricopeptide repeat domain 532 565 IPR002885 -
Ssu1g2652 768 TIGRFAM PPR: pentatricopeptide repeat domain 204 237 IPR002885 -
Ssu1g2652 768 TIGRFAM PPR: pentatricopeptide repeat domain 309 343 IPR002885 -
Ssu1g2652 768 Gene3D Tetratricopeptide repeat domain 449 595 IPR011990 GO:0005515
Ssu1g2652 768 Gene3D Tetratricopeptide repeat domain 250 366 IPR011990 GO:0005515
Ssu1g2652 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
Ssu1g2652 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 236 IPR002885 -
Ssu1g2652 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 495 529 IPR002885 -
Ssu1g2652 768 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Ssu1g2652 768 Pfam PPR repeat 232 262 IPR002885 -
Ssu1g2652 768 Gene3D Tetratricopeptide repeat domain 71 230 IPR011990 GO:0005515
Ssu1g2652 768 Gene3D Tetratricopeptide repeat domain 612 756 IPR011990 GO:0005515
Ssu1g2652 768 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 64 440 - -
Ssu1g2652 768 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 462 738 - -
Ssu1g2652 768 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 276 593 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2652 373 740 Glycosyltransferase AT1G05670 22.581 1.59e-20 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2652 - - lang:109340115 1041.57