Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2637 ATGGGTGAAGATAGCCCGCGAGTTGGTGGGTTTTCAGCTGGTCTGGCTGTGATATTGAACGGTGAGGACAGTAAGAAAAATTTGCCAAAAACTCGGCTTCTTTCTTGCTGTGACGATTTGGGTCAGCAGTCTGTGGAGCGAACCCTTGAGTACGTGTTTGGCCTCCCAAACAGATCACTCAATTCATTGACTGGTCCGGTTGATCGTAATTTTATTCGCTCCGTCATTAGGAATGATTTCTCACGATATAATGTGAAATTGAGTGATTCTTATGGTGAAAGAGATGGGGTTtgtattaatagtaaaaatggCAATGGACCTGATGTTATAGGCCTAGAAGAATCCAGCATCTGCGGTAATATTAAAGTCATCCAGTCACCTTTTCTTATAGAGAGCTTGGCGATGTTCAGTAGTGCCAGGGCTAGTGCTTGTGTTTGGAAAGGGAAATGGATGTATGAAGTTATGTTGGAAACATCTGGCATACAGCAGCTTGGTTGGGCCACTCTTTCTTGCCCTTTCACTGACCATAAAGGTGTTGGTGATGCCGATGATTCATATGCTTATGATGGGAGACGAGTTAGCAAGTGGAACAAGGATGCTGAGACATATGGGCAATCATGGGTTGTTGGTGATATCATTGGATGTTGTATAGATTTAGATCGAGATGAAATATTATTCTACAGGAATGGTAATTCACTTGGGGTGGCATTCCAAGGAATTCGAAAAATGGGTCCTGTTTTTGGTTATTATCCAGCAGTTTCTCTCTCCCAGGGGGAAAGATGTGAGTTGAACTTTGGAGCTCGACCCTTTAAGTATCCAATTGGAGGCTACCTTCCTCTTCAGGCTCCTCCCTCTAAGAGCTACTTTGTCACCCAATTGCTGCAATGCTGGTCAAGGCTGTTGGACATGCATTCAGTGGAACGAGCTGAGCATTCTTTAGTTCAGAAATTGAGAAGAGTGAACAGGTTTGTTTCATTGGAAGAAATTTTCCATCCTGCCTCTTATGCTATATGTGAGGAATTATTCTCTATACTTGAAGCAGATGTTGGGATCACAGAGTATACGGTTTGGGGTCCATTGTTGTCTTTCATGTTTGAAGTTTTTGGTTTGCATGCACCCCATGATTACTCAAGCTTGGATAAAGTGGTTGAGGTTTTGCTACAATTTCAAGGATCACATGTGGTATTTGAACACATCCTAAATGCCCTTTCCTGCGGTTGTAAAATAGCCTTATTCATTCTAACTGAATGTCCTTACTCTGGATCATATTCTCACCTTGCATTGGCATGTCATCTACTAAGACGAGAGGAACTTATGGTGCTTTGGTGGAAGTCACCacattttgaatatttgtttgAAGGTTTTCTGTCACTAAAGACTCCAAACAAACAGGATCTTGACTCCATGATACCAACTGTTTGGTGGCCTGGTTCATGTGAAGATGCATCTTATGAAGGTAACATGATGTTGACAACCACAGCTTTGTCTGAATCAGTCAGCAAGATTGAGGAGAAGCATAGGGACCTTTGTCGCTTAGTGATACAATTTATACCACCTACGAATCCTCCCCAGTTACCTGGAGCAGTATTTAGGACATTTTTACAGAGCCTTCTACTGAAGAACAGAGGAGCAGAACGAAATATTCCACCCCCTGGAGTTTCTAGCAACTCGGTTCTTGTTTCAATTTACACAGTTGTACTCCATTTTCTATCTGAAGGATTTGCCTTGGGTGACATTTGTGGCTGGTTAAGGAGCTGCAAGGGCGATGTTGGTTTCCTTCATAGAGGTGGTGAACAAAGTTTTCCTGTacatttatttctgaaaaatgaTCCACATAGAGCTGATATTTCCAGGATTGGGGGATCCTATAGCCATTTATCAAAGCTACACCCAACAATTGATTATGAAATGGAAGTGATTCGATGGGATGAAGGTTGCATGGATAGTGAAGAAACCAGGGTCACTCATTCAACCAGGCAGAAACCATGTTGTTGTTCTAGTTATGATTCTGATTTTACAAGGAACTTCAAGGTTCCGGCTAAATACCTGGCCAAAGGTTCTCGTGGTCATTGTAGCTCTATTCCAGAAAGACCTGCTCATGTTGCTGCTGAATGCAGTGATGGGAGTTTGAATGATGAGATAACAGATAAACCTAGCTCGAGTGATCAATCTGAACCTGAGTATGGTTACCGCCAAGTGCACCATATGAAGTCTGTACCAAAGGATACTAATATGTCTACAGCTACACTACGAGAAGAAGAGCTACTTGATACTTTGCTATGGTTGTATCATGTTGGTCTTGCTCCGAATTTTAAGCAGGCATCATACTACATGACTCATCAGGCACAGTCAATTTCCCTTTTGGAGGAAACTGATAAGCAAATAAGAGAACGAGCTTGCAGTGAGAAATTGAAGCATTTGAAAGAAGCTCGTAATGAATACAGAGAAGAGGTTATTGATTGTGTTAGGCATTGTGCTTGGTACCGCATCTCTCTATTTTCTCGATGGAAGCAGAGAGGAATGTATGCAATGTGCATGTGGGTTGTTCAGTTGCTACTGGTTCTTAGCAATATGGATTCGGTGTTTATCTACATCCCTGAATATTATCTGGAAGCTTTGGTTGATTGCTTTCATGTGTTGAGGAAAAGTGATCCTCCCTTTGTTCCATCCACAATTTTCATCAAGCGAGGACTTGCTTCATTTGTCACCTTTGTAGTTACCCATTTCAACGACCCAAGAATATCAAGTGCAGATCTTAGGGATCTTCTTCTTCAGTCTATATCTGTCCTGGTGCAGTACAGGGAGTATTTGGCTACTTTTGAGAGCAATGAGGCAGCCACCCAAAGGATGCCGAAAGCTTTATTATCAGCATTTGATAACAGATCTTGGATTCCAGTGACAAACATACTCTTACGATTATGCAAGGGCTctggttttagtttttcaaagaaTGGAGAATCATCTTCTTCATCAGTTCTTTTCCAAAGGTTGCTAAGAGAAGCTTGCAAAAGTGAAGAAGGATTGTTTTCATCTTTTCTAAACCGTCTGTTTAATACACTCAGCTGGACCATGACTGAATTTTCGGTTTCTGTTCGAGAAATGCAAGAAAAGTACCAGGTAATAGAGTTTCAGCAAAGGAAATGCTCTGTCATATTTGATCTTTCGTGTAATCTTACAAGGATTCTAGAGTTCTGCACTCGTGAGATTCCTCAAGCATTCCTGTCTGGACAAGACACAAACCTGCGAAGGTTAACCGAGTTGGTAGTATTTATCTTAAATCACATTACTTCTGCAGCCGATGCTGAATTCTTTGACTTGTCCCTTAGACGGCATAACCAATCTTCAGAAAAAGTAAACCGAAGCATGATATTGGCACCTTTAGTAGGGATCATCTTAAATTTGTTGGATGCTACAAATTCGGCAGAATATCGAGAAAACAATGATCTTTTAGATGTTTTTGCTAGCATGGACTGTCCAGATACTGTTCAGTATGGATTCCAGTATCTTTTGGATTATAACTGGGATGGATCTTTTCGGGGGGAAGCTTATGTGGCAAAATATGAGCAGCTAGAGAGTTTTCTTAGTCTTCTTACTTGCCGCATTGTGTTACATGATAAAGTGGATAGTGTGGCAGATACAGAACTTGATGATAGCTTGTGCTGCATATGTTACGCATGTGAAGCAGATACTCAAATTGCACCTTGTTCACACAGGTCTTGTTATGGCTGTATAACCAGGCACCTTTTGAACTGCCAGAGATGTTTCTTTTGCAATGCAACAGTAACAGATTTTAGCAAAATTGGTTAG 3807 0.4071 MGEDSPRVGGFSAGLAVILNGEDSKKNLPKTRLLSCCDDLGQQSVERTLEYVFGLPNRSLNSLTGPVDRNFIRSVIRNDFSRYNVKLSDSYGERDGVCINSKNGNGPDVIGLEESSICGNIKVIQSPFLIESLAMFSSARASACVWKGKWMYEVMLETSGIQQLGWATLSCPFTDHKGVGDADDSYAYDGRRVSKWNKDAETYGQSWVVGDIIGCCIDLDRDEILFYRNGNSLGVAFQGIRKMGPVFGYYPAVSLSQGERCELNFGARPFKYPIGGYLPLQAPPSKSYFVTQLLQCWSRLLDMHSVERAEHSLVQKLRRVNRFVSLEEIFHPASYAICEELFSILEADVGITEYTVWGPLLSFMFEVFGLHAPHDYSSLDKVVEVLLQFQGSHVVFEHILNALSCGCKIALFILTECPYSGSYSHLALACHLLRREELMVLWWKSPHFEYLFEGFLSLKTPNKQDLDSMIPTVWWPGSCEDASYEGNMMLTTTALSESVSKIEEKHRDLCRLVIQFIPPTNPPQLPGAVFRTFLQSLLLKNRGAERNIPPPGVSSNSVLVSIYTVVLHFLSEGFALGDICGWLRSCKGDVGFLHRGGEQSFPVHLFLKNDPHRADISRIGGSYSHLSKLHPTIDYEMEVIRWDEGCMDSEETRVTHSTRQKPCCCSSYDSDFTRNFKVPAKYLAKGSRGHCSSIPERPAHVAAECSDGSLNDEITDKPSSSDQSEPEYGYRQVHHMKSVPKDTNMSTATLREEELLDTLLWLYHVGLAPNFKQASYYMTHQAQSISLLEETDKQIRERACSEKLKHLKEARNEYREEVIDCVRHCAWYRISLFSRWKQRGMYAMCMWVVQLLLVLSNMDSVFIYIPEYYLEALVDCFHVLRKSDPPFVPSTIFIKRGLASFVTFVVTHFNDPRISSADLRDLLLQSISVLVQYREYLATFESNEAATQRMPKALLSAFDNRSWIPVTNILLRLCKGSGFSFSKNGESSSSSVLFQRLLREACKSEEGLFSSFLNRLFNTLSWTMTEFSVSVREMQEKYQVIEFQQRKCSVIFDLSCNLTRILEFCTREIPQAFLSGQDTNLRRLTELVVFILNHITSAADAEFFDLSLRRHNQSSEKVNRSMILAPLVGIILNLLDATNSAEYRENNDLLDVFASMDCPDTVQYGFQYLLDYNWDGSFRGEAYVAKYEQLESFLSLLTCRIVLHDKVDSVADTELDDSLCCICYACEADTQIAPCSHRSCYGCITRHLLNCQRCFFCNATVTDFSKIG 1268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2637 1268 Coils Coil 797 817 - -
Ssu1g2637 1268 CDD SPRY_RNF123 138 266 IPR035773 -
Ssu1g2637 1268 ProSiteProfiles B30.2/SPRY domain profile. 77 270 IPR001870 -
Ssu1g2637 1268 ProSiteProfiles Zinc finger RING-type profile. 1220 1254 IPR001841 -
Ssu1g2637 1268 Pfam Ubiquitin elongating factor core 757 958 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Ssu1g2637 1268 Gene3D - 119 297 IPR043136 -
Ssu1g2637 1268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1212 1267 IPR013083 -
Ssu1g2637 1268 Pfam SPRY domain 149 267 IPR003877 GO:0005515
Ssu1g2637 1268 CDD RING-HC_RNF123 1218 1258 - -
Ssu1g2637 1268 SUPERFAMILY Concanavalin A-like lectins/glucanases 131 282 IPR013320 -
Ssu1g2637 1268 Pfam E3 ubiquitin-protein ligase RKP N-terminus 1 138 IPR045737 -
Ssu1g2637 1268 MobiDBLite consensus disorder prediction 705 731 - -
Ssu1g2637 1268 PANTHER RING FINGER AND SRY DOMAIN-CONTAINING 41 1267 IPR045129 GO:0004842
Ssu1g2637 1268 SUPERFAMILY RING/U-box 1213 1262 - -
Ssu1g2637 1268 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF123 41 1267 - -
Ssu1g2637 1268 SMART SPRY_3 147 269 IPR003877 GO:0005515
Ssu1g2637 1268 MobiDBLite consensus disorder prediction 712 727 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2637 K12169 - gmx:100800617 2448.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2637 1 71746445 71755569 Ssu1g2637 1 71746445 71755569 ECH