Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2630 ATGCCGAGCCCCTCTCCTTCGGAGCCGGAAGCAGAAGCAGCGAAGAACCTGATCCCGTCCCTCCCAGACGACGTCGCTTTGAACTGCCTAGCACGCGTCCCTCGCTCCCACCACCCGACCCTCTCCCAGGTTTCCAAACCAATCCGAGCCCTCCTCTCTTCCCCTCTCTTCTTCACCACGCGCACCCTCCTCAACTGCACCCAGCCCCTCCTCTACCTCACTCTCCGCTCACGCGCCTCCTCCTTCCAGTGGTTCACGCTCCACCGCGGCACCCCTAGCCCCCTCCCCCCCGTCCCCTCCCCCGCCGTGGGCTCCGCCTACGCCGTCCTCGGCCCCACCATCTACGTCCTCGGCGGCTCCGTCAACGACGTCCCCTCCCCACGCGTCTGGCTCCTCGACTGCCGCTTCCACCGCTGGCTCCCCGGCCCCCCCATGCGCGTCGCCCGCGAGTTCGCCGCCGCCGCCGTCCTCGACGGCAAGATCTACGTCCTCGGCGGCTGCGTGGCCGACACCTGGGCTCGCTCCGCCAACTGGGCCGAGGTCCTCGACCCCGCCGCCGGGCGCTGGGAGCGGGTGCCCAGCCCCGCCGAGCTGAGGGAGAAGTGGATGCACGCGAGCGCCGTCGTCGGCGACACGGTCTACGCGATGGCGGACCGCGGCGGCATCGCGTTCGAGCCACGCAGCGGCGCGTGGGGGAGCGTGGGAGGGGAGCTGGATCTAGGGTGGCGAGGGAGGGCGTGCGTGGTGGAGGGGATTCTCTACTGCTACGACTATTTGGGGAAAATCAAAGGGTTCGACGTGGAGCGCGGGGCGTGGGAGGAGTTGAAGGGGTTGGAGAAGAAGGGTTTGCCCAGGTTTCTGTGTGGGGCCACCATGGCTGATTTTGGTGGGAAATTGTGTGTGGTCTGGGAGTCCCAAGGGAACGGGAAGGAAATGGAGATTTGGTGCGCTGAGATTCGGGTGGAGAAGAACCCCAATGGGGAATTGTGGGGTCAACTTGCTTGGTTCGGGAAGGTTCTTTCTGTTCCCAAAGGCTCCTCCATTGTGCATTGTTCTTCTGTTGCCTTGTGA 1071 0.6583 MPSPSPSEPEAEAAKNLIPSLPDDVALNCLARVPRSHHPTLSQVSKPIRALLSSPLFFTTRTLLNCTQPLLYLTLRSRASSFQWFTLHRGTPSPLPPVPSPAVGSAYAVLGPTIYVLGGSVNDVPSPRVWLLDCRFHRWLPGPPMRVAREFAAAAVLDGKIYVLGGCVADTWARSANWAEVLDPAAGRWERVPSPAELREKWMHASAVVGDTVYAMADRGGIAFEPRSGAWGSVGGELDLGWRGRACVVEGILYCYDYLGKIKGFDVERGAWEELKGLEKKGLPRFLCGATMADFGGKLCVVWESQGNGKEMEIWCAEIRVEKNPNGELWGQLAWFGKVLSVPKGSSIVHCSSVAL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2630 356 Pfam F-box domain 19 57 IPR001810 GO:0005515
Ssu1g2630 356 Gene3D - 71 326 IPR015915 GO:0005515
Ssu1g2630 356 SUPERFAMILY Kelch motif 80 338 IPR015915 GO:0005515
Ssu1g2630 356 SMART kelc_smart 160 212 IPR006652 GO:0005515
Ssu1g2630 356 SMART kelc_smart 113 159 IPR006652 GO:0005515
Ssu1g2630 356 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP6 6 339 - -
Ssu1g2630 356 SUPERFAMILY F-box domain 14 97 IPR036047 GO:0005515
Ssu1g2630 356 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 6 339 - -
Ssu1g2630 356 Pfam Kelch motif 149 195 IPR006652 GO:0005515
Ssu1g2630 356 Pfam Kelch motif 102 146 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2630 Ssu-Chr1 71681250 71682320 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2630 21 340 Miscellaneous Gene Families AT4G33900 38.177 2.25e-63 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2630 - - gmx:100798508 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2630 1 71681250 71682320 Ssu1g2630 1 71681250 71682320 ECH