Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2625 ATGCACCTGATGTCTCcaactttcaataaaaaatattatatctggATGGTTATTGTTTCTCTCGCACGGTCCCACCGTAAGCATTTCTGCATATTTGTTCTGGCACCTTCTTCTTCGTTCACCTCTTCCCCGTCGCAACACAACGCTACGCTGCAGCAATTCACCACTGCAGACTTGTCCAAGTTCAATCTCATTTCACTTCTCGCCAGGGATGGCAAGGACCCAAAAAACAAGGCTACTGCTCATCATTTGGGCTTGCTGAAGGCTAAACTTGCAAAGCTGCGGAGGGAACTCCTTACACCTACATCGAAAGGAGGTGCAGGTGCTGGTGAAGGTTTTGATGTTACTAAAAGTGGGGATTCAAGAGTTGGTCTTGTGGGCTTCCCTTCGGTTGGCAAATCTACTCTACTGAATAAGTTGACCGGGACGTTTTCAGAGGTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACATATCGAGGAGCTAAAATCCAGTTGTTGGATCTCCCTGGAATTATCGAGGGTGCTAAAGATGGAAAGGGTAGAGGAAGGCAGGTTATTAGTACTGCAAGGACATGCAATTGCATTTTAATTGTCCTTGATGCAATAAAGCCAATAACTCATAAGCGtcttatagaaaaagagctAGAGGGATTTGGTATAAGGTTAAACAAAGAGCCACCAAATCTGACTTTTAGGAAGAAAGATAAAGGTGGAATCAATCTCACCTCAACTGCCACCACAACACATCTGGATCTCGAGACTGTGAAGGCTATATGTAGTGAGTACAGAATTCACAACGCGGATATTACTCTCAGGTATGATGCCACTGCTGATGACCTTATAGATGTCATTGAGGGCAGTAGAGTATATATGCCTTGTATCTATGTTGTGAACAAGATTGATCAGATCACACTTGAGGAACTGGAGATCTTGGATAAGCTACCTCATTACTGCCCAATCAGTGCACACCTGGAGTGGAACCTTGATGGTCTTCTGGAGAAAATTTGGGAATATCTCGACTTAACTCGTATTTATACTAAACCTAAAGGGATGAATCCTGACTATGAAGACCCGGTAATATTATCGTCTAAGAAGAGGACCGTTGAGGACTTCTGCAATCGCATTCACAAGGACATGCTTAAACAGTTTAAGTATGCTTTGGTCTGGGGTTCAAGTGTGAAGCACAAGCCTCAAAGAGTTGGCAAGGAGCATGAACTTGAAGATGAAGACGTGGTTCAGATTATCAAGAAAGTATAA 1275 0.422 MHLMSPTFNKKYYIWMVIVSLARSHRKHFCIFVLAPSSSFTSSPSQHNATLQQFTTADLSKFNLISLLARDGKDPKNKATAHHLGLLKAKLAKLRRELLTPTSKGGAGAGEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKEPPNLTFRKKDKGGINLTSTATTTHLDLETVKAICSEYRIHNADITLRYDATADDLIDVIEGSRVYMPCIYVVNKIDQITLEELEILDKLPHYCPISAHLEWNLDGLLEKIWEYLDLTRIYTKPKGMNPDYEDPVILSSKKRTVEDFCNRIHKDMLKQFKYALVWGSSVKHKPQRVGKEHELEDEDVVQIIKKV 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2625 424 CDD DRG 121 353 IPR045001 GO:0003924|GO:0005525
Ssu1g2625 424 SUPERFAMILY TGS-like 342 422 IPR012676 -
Ssu1g2625 424 ProSitePatterns GTP1/OBG family signature. 173 186 IPR006074 GO:0005525
Ssu1g2625 424 Gene3D - 185 295 - -
Ssu1g2625 424 Gene3D - 72 142 - -
Ssu1g2625 424 PANTHER DEVELOPMENTALLY-REGULATED GTP-BINDING PROTEIN 1 74 423 - -
Ssu1g2625 424 TIGRFAM small_GTP: small GTP-binding protein domain 120 272 IPR005225 GO:0005525
Ssu1g2625 424 CDD TGS_DRG1 344 423 - -
Ssu1g2625 424 Pfam C-terminal region of MMR_HSR1 domain 242 347 IPR031662 -
Ssu1g2625 424 ProSiteProfiles TGS domain profile. 346 422 IPR004095 -
Ssu1g2625 424 Gene3D - 339 424 IPR012675 -
Ssu1g2625 424 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 121 346 IPR031167 GO:0005525
Ssu1g2625 424 PANTHER - 74 423 IPR045001 GO:0003924|GO:0005525
Ssu1g2625 424 Pfam TGS domain 349 422 IPR004095 -
Ssu1g2625 424 Pfam 50S ribosome-binding GTPase 122 214 IPR006073 GO:0005525
Ssu1g2625 424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 365 IPR027417 -
Ssu1g2625 424 PRINTS GTP1/OBG GTP-binding protein family signature 123 143 IPR006073 GO:0005525
Ssu1g2625 424 PRINTS GTP1/OBG GTP-binding protein family signature 144 162 IPR006073 GO:0005525
Ssu1g2625 424 PRINTS GTP1/OBG GTP-binding protein family signature 171 186 IPR006073 GO:0005525
Ssu1g2625 424 PRINTS GTP1/OBG GTP-binding protein family signature 188 206 IPR006073 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2625 Ssu-Chr1 71573771 71581297 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2625 K06944 - gmx:100796064 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2625 1 71573771 71581297 Ssu1g2625 1 71573771 71581297 ECH