Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2623 ATGCCAAAAGAGCTATGCCTATTATCTATCATCATTTCATTAGCAAAGAAAGCCTGTCCCATATCTCTCAACTGTCTCTCAAGATCTGAAATCACTCTCATGGAGCAAAGTAAGGAGAAAAATGCTCCTTGGTTATCAGTGCCACAGTTTGGGGACTGGGATCAGAAGGGACAAGTGCCAGACTACTCACTGGATTTCTCTAAAATTCGGGAAATGAGGAAGCAAAACAAGACAAATATTTCAAGGGCAAGTCTTGGTAATGAAGAGGAACTGATGGCTTCTACCACTAACAATACAAACACTGTCCACAGTGAAGAGCACCAGCACCCCCACTACCACCAAACCAACTCTCCAACTGAACCTAGCCTCAAATcttcattggattggattaaACACTAA 399 0.4085 MPKELCLLSIIISLAKKACPISLNCLSRSEITLMEQSKEKNAPWLSVPQFGDWDQKGQVPDYSLDFSKIREMRKQNKTNISRASLGNEEELMASTTNNTNTVHSEEHQHPHYHQTNSPTEPSLKSSLDWIKH 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2623 132 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 34 121 - -
Ssu1g2623 132 PANTHER PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR AVRRPT-CLEAVAGE: CLEAVAGE SITE PROTEIN 34 121 - -
Ssu1g2623 132 MobiDBLite consensus disorder prediction 75 132 - -
Ssu1g2623 132 MobiDBLite consensus disorder prediction 78 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2623 Ssu-Chr1 71554658 71556842 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2623 - - aprc:113863571 179.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2623 1 71554658 71556842 Ssu1g2623 1 71554658 71556842 ECH