Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2618 ATGGCTTCAACTTCAATCACGACCTTCTCCATCTCCTCGCAATCCCAATCAAAGTTCCTCAATCTGCGTGGGCTTCACACCCGCAACAAACGCGCATCAGTTTCGTTTCAGCCAGCCATAGTTCGCGCCACCCTTTTCTCAGCGCTCACTCGTTCCCACACCCCTTGCGCACCCTCCTCAAATTCGCCACCGGGAAGGGCTTTGTCCAAGTTCCTCTCAGAAAAGATTGCCTTTTTCCTCATTGGGTCGTTTATCTTATCGGGTTGCTTCAGCAAAAGAGCTGCCTTCGCAGAATCAGAGCCTTCAGTGGGTTCTGGCGCAGTGTTGGAGGAGAAGATGAAAACCACGGAAGAGAAAAGCGAGGAGGAGGAAATGTGGGAGAAGATTTTGAAGAGGGATCCGAGAAATGTTGAGGCTCTCAAGGTGGTTTTGTATGGGAAGATTAGGAGAGGGAAGTCGAAGGAGGCTGTGAAGTTTGTGGAGAATTTGATTGCTGTGGAGCCCAGTGAGGTTGAGTGGAGGCTTTTGCTGGCGCTTTGTTATGAGACTATGGGGCGCTTGAGTACGGCTAAGAGATTGTTCAGGGAAATCTTGCAGGAACGGCCTCTTCTAGTCAGAGCTCTGCATGGTTTGGCTATGGCAATGCACAAAAACCATGAAGGTCCTGCTGTATTTGAAATGCTAAATAATGCTCAAGAGTTAGCTTCTCGTGAAAACAGAGTTACTGAGGAGAGAAATATAAGAATCTTAATTGCACAAATGCACGTTGTACAGGGTAATTTGgaggagggactaaaaagatttcAAGAATTGATTGATCAAAACCCTAGAGATTTTAGGCCTTATATTTGCCAGGTGAGTTTGTCAGCTGGTCAATTATGA 882 0.458 MASTSITTFSISSQSQSKFLNLRGLHTRNKRASVSFQPAIVRATLFSALTRSHTPCAPSSNSPPGRALSKFLSEKIAFFLIGSFILSGCFSKRAAFAESEPSVGSGAVLEEKMKTTEEKSEEEEMWEKILKRDPRNVEALKVVLYGKIRRGKSKEAVKFVENLIAVEPSEVEWRLLLALCYETMGRLSTAKRLFREILQERPLLVRALHGLAMAMHKNHEGPAVFEMLNNAQELASRENRVTEERNIRILIAQMHVVQGNLEEGLKRFQELIDQNPRDFRPYICQVSLSAGQL 293
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2618 293 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 11 285 - -
Ssu1g2618 293 ProSiteProfiles TPR repeat profile. 245 278 IPR019734 GO:0005515
Ssu1g2618 293 Pfam Tetratricopeptide repeat 149 208 - -
Ssu1g2618 293 PANTHER OS05G0182100 PROTEIN 11 285 - -
Ssu1g2618 293 Gene3D Tetratricopeptide repeat domain 107 289 IPR011990 GO:0005515
Ssu1g2618 293 SUPERFAMILY TPR-like 123 280 IPR011990 GO:0005515
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ssu1g2618 Ssu-Chr1 71495100 71497675 Dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2618 - - gmx:100795327 441.039