Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2607 ATGGATAGGTATCAGAGGGTAGAGAAGCCCAAGGCAGAGACTCCTATAAACGAGAACGAGATACGCGTTACTACTCAAGGGAGGATGAGGAATTATATCACCTACGCCACCACTCTCCTTCAGGAGAAAGGATCCAATGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAATAAGACTGTAATGATTGCTGAACTGATCAAGAGAAGGATTGTTGGTCTGCATCAAAACACCCTAATTGGATCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCCTTTGGAGACTACTCGCCATGTTTCAATGATCACAATTACCTTGTCAAAAAAAGAACTTGATACTTCCTCCACAGGATACCAACCTCCTCTTCCAGCTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGAAGGCTCACCAAGCATGCGAGGAAGAGGGCGTGGTCGTGGAAGGGGCAGGGGTAGAGGAATTTACAATGGGGGTATGGAATATGGTGATGGTTGGGATGGTGGACGTGGCTATGGTGGAAGAGGGCGTGGCCGTGCAAGGGGGCGTGCTTTTCGGGGACGAGGACGAGGACGAGGCTATGGTACCCAACCAATTGGTTACTATGACTATGGTGAATATGATGTGCCACCTGCCCCACGTGGTAAGCATGCAAGTCCACAAAATTTAGATTTCATGATAATGAAGACAAGTTGTTGTTGCTTAAATTACTACTGTTGTATTATCAGATAA 759 0.4506 MDRYQRVEKPKAETPINENEIRVTTQGRMRNYITYATTLLQEKGSNEIVLKAMGRAINKTVMIAELIKRRIVGLHQNTLIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELDTSSTGYQPPLPADQVKPLNEYEEEGEGSPSMRGRGRGRGRGRGRGIYNGGMEYGDGWDGGRGYGGRGRGRARGRAFRGRGRGRGYGTQPIGYYDYGEYDVPPAPRGKHASPQNLDFMIMKTSCCCLNYYCCIIR 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2607 252 SUPERFAMILY AlbA-like 16 129 IPR036882 GO:0003676
Ssu1g2607 252 Pfam Alba 19 83 IPR002775 GO:0003676
Ssu1g2607 252 PANTHER RIBONUCLEASE P SUBUNIT P25 1 211 - -
Ssu1g2607 252 MobiDBLite consensus disorder prediction 117 161 - -
Ssu1g2607 252 MobiDBLite consensus disorder prediction 135 151 - -
Ssu1g2607 252 PANTHER ALBA DNA/RNA-BINDING PROTEIN 1 211 - -
Ssu1g2607 252 Gene3D - 14 118 IPR036882 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2607 Ssu-Chr1 71157111 71160905 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2607 - - gmx:100792158 323.168