Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2595 ATGGCGACAAAAGCTTTGTCCTTCGCTCTGTCTCTCAACGACCTCACCAACCGCTTCGCTTCCAAGTCACCACACACCGCCGCCAAAGTTTCCGTCTTTACCGTCAGATGCTCTTCGGGTAGTGGAGAGAGGCCTTGGAAAAATTCAGATGCTAGACTTGTGCTAGAAGATGGTTCAATTTGGAGGGCAAAATCATTTGGTGCTTCGGGGACACAAGTTGGCGAAGTTGTTTTTAATACATCATTGACTGGGTATCAAGAAATGTTGACAGATCCCAGTTATGCTGGCCAGTTTGTGCTGATGACAAACCCCCATATTGGGAATACTGGCATAAATTTTGATGATGAGGAATCAATAGAGTGTTTCCTTGCTGGTCTAGTAATTAGAAGTTTGAGTATCAGTACCTCTAACTGGAGATGTGCAAAGGCTCTGGGGGATTACTTAGCCGAAAGGAATATCATGGGAATTTATGATGTTGATACTCGTGCGATCACGCGCCGATTGCGGGAAGATGGCAGTCTTATTGGTGTCTTGAGCACTGACAATTCCAAAACAGACGAGGAACTGCTTCAGATGTCTAAGGCATGGGACATTGTTGGTGTTGATCTAATAAGTGGAGTATCATGCAAATCTCCACATGAATGGGTCGATAAAACAACGCACGATTGGGAGTTTAGTTCCAATAAAGTGCCTGGAGAGACTTTCCATGTAGTTGCTTATGATTTTGGAATCAAGCATAATATACTTAGGCGCCTAGCATCTTATGGCTGCAAAATCACTGTTGTGCCATCTACATGGCCCGCATCAGAAACTTTGAAAATGAACCCAGATGGGGTTCTTTTCAGCAATGGCCCTGGAGATCCGTCTGCTGTTCCTTATGCCGTTGAAACAGTAAAGAATATTATCGGAAAGGTGCCTGTTTTTGGAATTTGCATGGGCCATCAATTGTCAGGCCAGGCTTTAGGAGGTAAAACCTTCAAAATGAAATTTGGTCACCATGGAGGAAATCATCCTGTTCGTAACCTTCGAACTGGCCACGTTGAAATTAGTGCTCAGAACCACAACTATGCTGTTGACCCTGCCACACTGCCCGAAGGAGTGGAGGTTACTCACATCAATCTTAATGATGGAAGTTGTGCTGGTCTTGCTTTCCCTGCTAAAAAACTTATGTCTCTTCAATACCACCCTGAAGCATCCCCTGGGCCTCATGATTCTGACTACGCTTTTAGGGAGTTTATAGAGTTAATGAAGCAAGGAAAAAACAGAACACCAAAGGAAAGTCTAGACCAACTATCAACGGCACATGCTTTGGATGCTAGTGGTTGA 1326 0.4434 MATKALSFALSLNDLTNRFASKSPHTAAKVSVFTVRCSSGSGERPWKNSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEMLTDPSYAGQFVLMTNPHIGNTGINFDDEESIECFLAGLVIRSLSISTSNWRCAKALGDYLAERNIMGIYDVDTRAITRRLREDGSLIGVLSTDNSKTDEELLQMSKAWDIVGVDLISGVSCKSPHEWVDKTTHDWEFSSNKVPGETFHVVAYDFGIKHNILRRLASYGCKITVVPSTWPASETLKMNPDGVLFSNGPGDPSAVPYAVETVKNIIGKVPVFGICMGHQLSGQALGGKTFKMKFGHHGGNHPVRNLRTGHVEISAQNHNYAVDPATLPEGVEVTHINLNDGSCAGLAFPAKKLMSLQYHPEASPGPHDSDYAFREFIELMKQGKNRTPKESLDQLSTAHALDASG 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2595 441 SMART CPSase_sm_chain_2 49 179 IPR002474 -
Ssu1g2595 441 MobiDBLite consensus disorder prediction 421 441 - -
Ssu1g2595 441 Gene3D - 49 197 IPR036480 -
Ssu1g2595 441 PRINTS Glutamine amidotransferase superfamily signature 391 404 - -
Ssu1g2595 441 PRINTS Glutamine amidotransferase superfamily signature 279 288 - -
Ssu1g2595 441 PRINTS Glutamine amidotransferase superfamily signature 306 317 - -
Ssu1g2595 441 PRINTS Anthranilate synthase component II signature 391 404 - -
Ssu1g2595 441 PRINTS Anthranilate synthase component II signature 279 288 - -
Ssu1g2595 441 PRINTS Anthranilate synthase component II signature 306 317 - -
Ssu1g2595 441 MobiDBLite consensus disorder prediction 425 441 - -
Ssu1g2595 441 Pfam Glutamine amidotransferase class-I 240 414 IPR017926 -
Ssu1g2595 441 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 306 322 - -
Ssu1g2595 441 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 237 251 - -
Ssu1g2595 441 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 323 340 - -
Ssu1g2595 441 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 276 290 - -
Ssu1g2595 441 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 348 359 - -
Ssu1g2595 441 PANTHER CARBAMOYLTRANSFERASE FAMILY MEMBER 30 419 - -
Ssu1g2595 441 Pfam Carbamoyl-phosphate synthase small chain, CPSase domain 53 177 IPR002474 -
Ssu1g2595 441 SUPERFAMILY Class I glutamine amidotransferase-like 211 418 IPR029062 -
Ssu1g2595 441 CDD GATase1_CPSase 237 413 IPR035686 -
Ssu1g2595 441 Hamap Carbamoyl-phosphate synthase small chain [carA]. 49 420 IPR006274 GO:0004088|GO:0006207|GO:0006541
Ssu1g2595 441 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 236 422 - -
Ssu1g2595 441 PANTHER CARBAMOYL-PHOSPHATE SYNTHASE ARGININE-SPECIFIC SMALL CHAIN 30 419 - -
Ssu1g2595 441 Gene3D - 198 420 IPR029062 -
Ssu1g2595 441 SUPERFAMILY Carbamoyl phosphate synthetase, small subunit N-terminal domain 50 195 IPR036480 -
Ssu1g2595 441 TIGRFAM CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 51 418 IPR006274 GO:0004088|GO:0006207|GO:0006541
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2595 Ssu-Chr1 70899587 70902464 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2595 K01956 - gmx:100806168 813.142