Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2574 ATGAATTCTCAACTCGCGAACACCATCGATTGGCTCCAACTCCCAAAGCCCTTCTTCCCTCCCAAAACCCCTTTACCCCAATTTCTCCACTCTTCACCTCGCTTTCTCACGACCACATTCCCCCCTCGCAACTTCACCAATCGATGCAAACTCAGAACCACCGCTTCCAGTTCTCTTTCGGACACAACTACTCCCAacaaagaacaagaagaagacGCCGAATCCGCTCAACTATTCGAGAAACTGAAGGAGGCGGAAAGGAAACGGATAAATGAGTTGGAAGAGTTTGACAGGAAGGCGAACGTTCAGTTAGAGAGGCAGCTTGTGATGGCTTCGTCATGGAGCAGAGCTTTGTTGACTTTGCGCGGAAAACTCAAGGGAACTGAGTGGGATCCTGAAAATTCACACAGGATAGACTTCAGTGATTTTTTGAGACTTCTTGACTCTAATAATGTCCAGTTTATGGAGTACTCTAATTACGGTCAAACAATATCAGTTATTCTACCGTATTACAAAAATGGGAAACCGTCAGGAACTGTAGGGAATCCTAAGGATATTATTTTTCGGCGTCATCCAGTCAAACAAATGCCAATTGATTGTTGGAATGATGTTTGGAGAAAGCTGCATCAGCAAATTGTAAATGTTGATGTCATTAATGTGGATGCTGTACCTGCTGAAATATACTCGACTGTTGCAACTGCAGTCATATGGTCTATGCGTCTTGCTCTGGCTGTTGGATTTTATGTGTGGATTGATAATTTGATGAGACCAATATATGCGAAGTTGATACCTTGTGATTTGGGAACTCCTAGCCCACAAACTAGGCAGCCACTCAGAAGTCGTGCACTTGGATCTCTAGGCCAGAGTCGGGCTAAATTTATATCTGCAGAAGAAAGAACTGGTGTTACATTTGATGATTTTGCTGGCCAggaatatataaagaaagaacTACAAGAGATTGTCCGAATTTTAAAGAATGATGAGGAGTTTCAAGACAAAGGAATTTATTGTCCAAAAGGTGTACTTCTTCATGGGCCTCCTGGAACTGGTAAAACTCTACTGGCTAAAGCCATTGCAGGTGAAGCAGGGTTGCCTTTTTTTGCAGCTAATGGCACGGATTTTGTAGAGATGTTTGTAGGGGTTGCTGCATCCCGTGTTAAAGACCTATTTGCAAATGCAAGATCATTTTCACCTTCTATAATCTTTATTGATGAGATAGATGCTATTGGTAGCAAGCGTGGAGGACCTGATATTGGTGGAGGAGGTGCTGAAAGGGAACAGGGATTACTTCAGATACTGACTGAGATGGATGGATTCAAAGTTTCCACAGCACAGGTGCTCGTGATAGGTGCCACAAATAGATTGGATATTCTTGATCCTGCCCTATTGAGGAAGGGTCGTTTTGACAAGATCATTAGAGTTGGTTTGCCATCAGAGGATGGACGATTTGCCATTTTGAAGGTGCATGCTAGGAATAAATTTTTTCGCTCTGAGGAGGAAAAGGAGACTCTACTTAAGGAAATTGCTGAACTGACAGAAGATTTTACTGGGGCAGAGCTACAAAATATACTGAATGAAGCTGGAATTTTGACAGCCAGGAAGGATTTGGACTACATTAGACGAGATGAGCTGCTTGAGGCATTAAAAAGGCAAAAGGGAACATTTGAAACAGGGCAAGAGGATAGTACCGAAATTCCTGAAGAGTTGAAACTGAGATTGGCATACAGAGAAGCAGCTGTTGCTGTTCTTGCATGTTATTTTCCTGAGCCCCACCGTCCTTTTGTTGAGACTGATATAAATTCTATCCGCAGCCAGCCACATATGCATTATACTGAAGTTCCCGGCCAGGTTTTTGCAAGGAAATCAGATTACATACACTCTATAGTGCGTGCTTGTGCTCCAAGAGTAATTGAGGAGGATATGTTTGGGATTGACAACTTGTGTTGGATCTCTGCAAACGCAACATTAGAAGCTTCAAGGCGTGCAGAGTTTTTAATTCTGCAGACAGGAATGACTGCTTTTGGGAAAgcatattacaaaaatcatagTGATCTCGTGCCCAATCTTGCAATGAAGCTTGAAGCACTTCGGGATGAGTATATGCGTTATGCTACAGAGAAGTGCTCATCTGTGCTAAAAGAATACCATTTAGCAGTTGAGACAATCACAGATATTTTGCTTGAAAAGGGGAAAATCAAAGCTGAGGAGATTTGGGACATTTATAAGAGTGCACCTCGTGTAGCTCAGCCTTCTGTCAGTCCAGTTGATGAATATGGAGCACTGATTTATGCTGGACGATGGGGAATCCATGGGATCAGTCTTCCCGGAAGGGTTACATTTGCGCCAGGCAATGTTGGATTTTCCACCTTTGGTGCACCTCGCCCTACAGAGACACAAATTGTTAGTGATGAAACTTGGAAACTAGTAGATGATATCTGGGATAAAAAGGTTCAAAACATTAGAGATGAAGGTTCAAGGGTGattgaagaagagaaagaaaagccACAACTTTTGATGGCGAGCCATTTTCTTTGA 2535 0.4162 MNSQLANTIDWLQLPKPFFPPKTPLPQFLHSSPRFLTTTFPPRNFTNRCKLRTTASSSLSDTTTPNKEQEEDAESAQLFEKLKEAERKRINELEEFDRKANVQLERQLVMASSWSRALLTLRGKLKGTEWDPENSHRIDFSDFLRLLDSNNVQFMEYSNYGQTISVILPYYKNGKPSGTVGNPKDIIFRRHPVKQMPIDCWNDVWRKLHQQIVNVDVINVDAVPAEIYSTVATAVIWSMRLALAVGFYVWIDNLMRPIYAKLIPCDLGTPSPQTRQPLRSRALGSLGQSRAKFISAEERTGVTFDDFAGQEYIKKELQEIVRILKNDEEFQDKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGLPFFAANGTDFVEMFVGVAASRVKDLFANARSFSPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTAQVLVIGATNRLDILDPALLRKGRFDKIIRVGLPSEDGRFAILKVHARNKFFRSEEEKETLLKEIAELTEDFTGAELQNILNEAGILTARKDLDYIRRDELLEALKRQKGTFETGQEDSTEIPEELKLRLAYREAAVAVLACYFPEPHRPFVETDINSIRSQPHMHYTEVPGQVFARKSDYIHSIVRACAPRVIEEDMFGIDNLCWISANATLEASRRAEFLILQTGMTAFGKAYYKNHSDLVPNLAMKLEALRDEYMRYATEKCSSVLKEYHLAVETITDILLEKGKIKAEEIWDIYKSAPRVAQPSVSPVDEYGALIYAGRWGIHGISLPGRVTFAPGNVGFSTFGAPRPTETQIVSDETWKLVDDIWDKKVQNIRDEGSRVIEEEKEKPQLLMASHFL 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2574 844 ProSitePatterns AAA-protein family signature. 446 464 IPR003960 GO:0005524|GO:0016887
Ssu1g2574 844 Gene3D Peptidase M41 559 746 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Ssu1g2574 844 Coils Coil 68 95 - -
Ssu1g2574 844 Pfam AAA+ lid domain 505 545 IPR041569 -
Ssu1g2574 844 SUPERFAMILY FtsH protease domain-like 566 746 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Ssu1g2574 844 PANTHER INACTIVE ATP-DEPENDENT ZINC METALLOPROTEASE FTSHI 4, CHLOROPLASTIC-RELATED 45 813 - -
Ssu1g2574 844 Gene3D - 477 557 - -
Ssu1g2574 844 CDD AAA 308 476 - -
Ssu1g2574 844 Pfam ATPase family associated with various cellular activities (AAA) 341 475 IPR003959 GO:0005524|GO:0016887
Ssu1g2574 844 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 297 550 IPR027417 -
Ssu1g2574 844 PANTHER METALLOPROTEASE M41 FTSH 45 813 - -
Ssu1g2574 844 SMART AAA_5 337 478 IPR003593 -
Ssu1g2574 844 Gene3D - 286 475 IPR027417 -
Ssu1g2574 844 Coils Coil 494 521 - -
Ssu1g2574 844 MobiDBLite consensus disorder prediction 51 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2574 Ssu-Chr1 70525080 70535026 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2574 242 614 Miscellaneous Gene Families AT3G47060 41.333 8.65e-68 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2574 - - gmx:100782783 1541.94