Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2573 ATGGTGAGCAGAGGCTCGTACAGCTCTAGCAGCCTCTTGACTGGTAGATTTCATGCTAGAAAACTATCTCGCAGCATTATCACTTTCTACACCATGTTCATATTTGCTTTCTCCATCTTCGTGTTCTTGTTCTACTTGAGGAACATCACTGTTGATGAAGATCCACGACACCCTTTGCTTTCTCAACAATCTAAATCTCATCAGGTGCCAGAGTTACATGTGCACTATAAGCAACTTTGGGATTCTCCATTCAATCATGGCTTACACCAATGTGTTAAGCCGACTACTAAATATAAAGCTGCCCAAGGATTTGATCGCTATCTAACTGTGAGAAGTAATGGTGGACTAAATCAAATGCGAACTGGTATATCAGACATGGTGGCTGTGGCACATATAATGAATGCGACTTTAGTCATACCTCAATTGGATAGACGTTCATTCTGGAAAGACTCAAGTGTATTTTCAGATATATTTGATGAGTTTCATTTCATCGAATCCCTGAAAGGAGATATCAGAATTGTTAAGGAGCTTCCCAAAAACCTGGAAGGTGTCCCCCGGGCCAGGAAACACTTTACTTCCTGGTCTGGAGTTGGTTACTATGAAGAGATGATAAGGTTATGGAATGACTATCAGGTGATACATGTTGCAAAATCAGACTCTCGACTTGCAAACAATGATCTTCCTCTGGACATACAGAGGTTGAGATGCCGTGCAATGTATCATGCACTTCGATTTTCTCCCCCTATAGAGGATTTAGGAAAGAGGTTGGTGGATCGTCTGAGATCACGGAGAGGAAGATATATTGCTCTCCATCTGAGATACGAGAAAGATATGCTGTCTTTTACTGGTTGTGCATATGGACTGACAGATGCAGAATCTGAAGAGCTTAGAATTTTGAGGGAGAATACAAATTATTGGAaagtgaaaaagataaattcaacAGAACAGAGAATTGGAGGATTTTGTCCGCTGACTCCAAAGGAGGTGGGAATTTTTCTTCATGCTCTTGGGTATCCCCCATCGACACCAATATACATTGCAGCAGGAGAGATCTATGGTGGTAATACTCATCTTTCGGAGCTCTCATCCCGCTTCCCTAATCTAATCTTTAAGGAATCCCTTGCAACTCCTGAAGAGCTGAAAGCTTTCGCCAATCATGCATCTCAAACTGCTGCCCTTGATTACATAATCTGTGTAGAGAGTGATGTATTTGTTCCGTCATATTCAGGAAATATGGCAAGAGCAGTTGAGGGACACCGCAGATTCTTAGGTCACCACAAGACAATCAACCCAGACAGGAAAGGACTTGTTGAAATTTTTGATATGCTGGAAACTGGAGAGCTAGAAGAAGGACGGGAACTATCACATATGGTACAGCGGATGCACAAGAACAGGCAAGGAGCTCCAAGGAAAAGGCACGGTTCCCTACCGGGAATTAAAGGCCGAGCACGATTTAGGACTGAAGAGTCCTTTTATGAAAATCCATATCCTGAGTGTATATGTGGTTCTAAAAGCAAACTAGAAATAACATGA 1533 0.4168 MVSRGSYSSSSLLTGRFHARKLSRSIITFYTMFIFAFSIFVFLFYLRNITVDEDPRHPLLSQQSKSHQVPELHVHYKQLWDSPFNHGLHQCVKPTTKYKAAQGFDRYLTVRSNGGLNQMRTGISDMVAVAHIMNATLVIPQLDRRSFWKDSSVFSDIFDEFHFIESLKGDIRIVKELPKNLEGVPRARKHFTSWSGVGYYEEMIRLWNDYQVIHVAKSDSRLANNDLPLDIQRLRCRAMYHALRFSPPIEDLGKRLVDRLRSRRGRYIALHLRYEKDMLSFTGCAYGLTDAESEELRILRENTNYWKVKKINSTEQRIGGFCPLTPKEVGIFLHALGYPPSTPIYIAAGEIYGGNTHLSELSSRFPNLIFKESLATPEELKAFANHASQTAALDYIICVESDVFVPSYSGNMARAVEGHRRFLGHHKTINPDRKGLVEIFDMLETGELEEGRELSHMVQRMHKNRQGAPRKRHGSLPGIKGRARFRTEESFYENPYPECICGSKSKLEIT 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2573 510 CDD O-FucT_plant 107 428 IPR024709 -
Ssu1g2573 510 Pfam GDP-fucose protein O-fucosyltransferase 107 422 IPR019378 -
Ssu1g2573 510 PANTHER OS02G0726500 PROTEIN-RELATED 8 505 - -
Ssu1g2573 510 PIRSF UCP009360 3 505 IPR024709 -
Ssu1g2573 510 PANTHER O-FUCOSYLTRANSFERASE 38 8 505 - -
Ssu1g2573 510 Gene3D - 241 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2573 Ssu-Chr1 70503777 70517369 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2573 76 501 Miscellaneous Gene Families AT1G22460 59.016 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2573 - - gmx:100810961 948.732