Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2556 ATGAAGATAAAATCCCATTCTTCCTTCTTCCTCGTGTTTTTTATAGCATTTTCCCGCACACACGTTTGTTTAGCAGAATGTGATAATCTGAAGGACTTTTGCCCTGCCACTCCACCCGAAAAGCAGGCCATATTCATCAATGGCCTCCCCTGCGAGGACCCAGATAACACAAGTGCCCATGATTTCAAGAGCATGGAATTAAGCAAGGCTGGTTCCAGGGACGACTTTGGttcatcaattaaaattgtaacTGCTTCCAAGTTTCTGGGGCTTAACACTCTTGGCCTCGCAATTGGTAGAAGTGACATTGAAGTGGATGGGCTTGTGAACCTCCACAACCACCCAAGAGCCACTGAGATGATCTATGTCAGCGAAGGTGTGTTGGTGGCTGCGTTTCTCGACACCCAAAACCAGCTCTTCCAAAAGACTCTCAGGGATGGGGATGTGTTCGTGATCCCCAAGGGCTTGTTCCATTTCTTCCTAAACCGTGGTGCACAAGTGGCAACTGTGTTCTCTGTGTTCAACAGCCAAAATCCGGGGCTGGGGTCCCTCTCTTCCATACCTTCTGACTCCACATTGGAATCGGTTGAGAAGCTCAAGAGGATGCTCGCCTCACTCTCTGACTCAGAACTTGATGGTGTAAATGATGATTTGACTTCAGCAGTGTTGGATATCATTTATAGTTAA 687 0.4629 MKIKSHSSFFLVFFIAFSRTHVCLAECDNLKDFCPATPPEKQAIFINGLPCEDPDNTSAHDFKSMELSKAGSRDDFGSSIKIVTASKFLGLNTLGLAIGRSDIEVDGLVNLHNHPRATEMIYVSEGVLVAAFLDTQNQLFQKTLRDGDVFVIPKGLFHFFLNRGAQVATVFSVFNSQNPGLGSLSSIPSDSTLESVEKLKRMLASLSDSELDGVNDDLTSAVLDIIYS 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2556 228 Gene3D Jelly Rolls 25 206 IPR014710 -
Ssu1g2556 228 SMART Cupin_1_3 68 200 IPR006045 -
Ssu1g2556 228 CDD cupin_OxOx 28 186 - -
Ssu1g2556 228 Pfam Cupin 77 184 IPR006045 -
Ssu1g2556 228 SUPERFAMILY RmlC-like cupins 43 185 IPR011051 -
Ssu1g2556 228 PRINTS Germin signature 175 190 IPR001929 GO:0030145
Ssu1g2556 228 PRINTS Germin signature 112 132 IPR001929 GO:0030145
Ssu1g2556 228 PRINTS Germin signature 142 162 IPR001929 GO:0030145
Ssu1g2556 228 ProSitePatterns Germin family signature. 107 120 IPR019780 GO:0030145
Ssu1g2556 228 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 4 12 210 - -
Ssu1g2556 228 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 12 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2556 Ssu-Chr1 70104742 70105428 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2556 10 190 Miscellaneous Gene Families AT3G05930 38.220 2.20e-32 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2556 - - gmx:100809017 355.14