Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2555 ATGTCGATCGAGGATTTCGGCGGCGTCGGCGACGGCAGCACTTCCAACACCGAATCGTTTCGGAGGGCGATTCGGTACATGCAGCGCTTCCAGAACCGCGGTGGGTCCCAGCTGAATATCCCCAGGGGGACATGGCTCACCGGGAGTTTCAATCTCACCAGTAATTTCACGCTTTTTCTTCACGACGGTGCCGTTATTCTAGCCTCTCAGGACCCCAAAGAATGGCCAATAATTGAGGCATTGCCATCTTAtggaagagggagagagaggttTGGAGGAAGACATATTAGCCTTATACATGGAAATGGCATCAGCAATGTTGTCATTACAGGACAAAATGGGACAGTTGATGGTCAAGGAAAGATGTGGTGGGAACTTTGGTGGAACAGAACATTGGAGCACACAAGAGGGCACCTCCTTGAAATAATGAACTCGGATAATGTTCTCATATCAAACCTCACCTTCCGAAATTCCCCTTTTTGGACCATCCATCCTGTTTATTGCAGCAATGTTGTGATCAAAGGGATGACAATCTTGGCTCCTCTTAATGCCCCAAATACTGATGGCATAGACCCAGACTCAAGTACCAATGTATGTATTGAAGATAACTACATAGAAAGCGGGGATGATCTTGTAGCCATTAAGAGTGGTTGGGATCAATATGGAATCACCGTGGCCCATCCTAGCACAAATATTGTAGTGAGGAGAATATCAGGCACTACCCCAACCTGCTCTGGAGTAGGCATAGGTAGTGAAATGTCTGGCGGAATTTCAAATATCACAATTGAGAATTTGCATGTGTGGGATTCTGCAGCTGGTGTTCGCATAAAATCTGATAAAGGCAGAGGAGGCTATATATCTAGTGTTAGTATAAGTAATATAAGAATGGAGAGAGTCAAGATACCCATTAGGTTCAGTAGAGGTTCAAATGACCATCCTGATGATGGATGGGATCCAAAAGCTGTTcctagatttaaagatattttgatCAGTAATGTGGTCAGTGTAAATTCAACAAAAGCCCCAGTTTTGGAAGGTGTGGAGGGTTCATCATTTGAAGGCTTATGCTTCAAAAATATTACCCTCCATGGAGTAGCCTTATCTGCAAAATGGCGTTGTGAATATGTCTCTGGTTTTGCCACCGAGGTTTTCCCTGTTCCATGTCTAGAGTTGCGGAACAACAGCTATTCATCCTGGTGTTCACCTTCCTAA 1212 0.434 MSIEDFGGVGDGSTSNTESFRRAIRYMQRFQNRGGSQLNIPRGTWLTGSFNLTSNFTLFLHDGAVILASQDPKEWPIIEALPSYGRGRERFGGRHISLIHGNGISNVVITGQNGTVDGQGKMWWELWWNRTLEHTRGHLLEIMNSDNVLISNLTFRNSPFWTIHPVYCSNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDNYIESGDDLVAIKSGWDQYGITVAHPSTNIVVRRISGTTPTCSGVGIGSEMSGGISNITIENLHVWDSAAGVRIKSDKGRGGYISSVSISNIRMERVKIPIRFSRGSNDHPDDGWDPKAVPRFKDILISNVVSVNSTKAPVLEGVEGSSFEGLCFKNITLHGVALSAKWRCEYVSGFATEVFPVPCLELRNNSYSSWCSPS 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2555 403 SMART pbh1 229 251 IPR006626 -
Ssu1g2555 403 SMART pbh1 168 194 IPR006626 -
Ssu1g2555 403 SMART pbh1 257 278 IPR006626 -
Ssu1g2555 403 SMART pbh1 145 167 IPR006626 -
Ssu1g2555 403 SMART pbh1 195 227 IPR006626 -
Ssu1g2555 403 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 1 401 - -
Ssu1g2555 403 PANTHER PECTIN LYASE-RELATED 1 401 - -
Ssu1g2555 403 Pfam Glycosyl hydrolases family 28 97 377 IPR000743 GO:0004650|GO:0005975
Ssu1g2555 403 Gene3D - 1 380 IPR012334 -
Ssu1g2555 403 SUPERFAMILY Pectin lyase-like 2 392 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2555 Ssu-Chr1 70099075 70102018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2555 1 391 Glycoside Hydrolase AT4G33440 74.425 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2555 - - gmx:100814190 801.201