Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2551 ATGGGGAAATTCAGCACCATCCTCTCACGTTTCAAATCAAAGACAAAATTCTCGGTTGGGCTTCATCGAAGCTCTTGGACTTCTCGTTCTCGCACCACTCCACTTTGCCCCAGTCAACCCCACCTTAATTCCAGCTACCTCACGCAGAATCGTGATTCcctattattttctcttctctcttcgcGCCGCTTCGCCTCCACTACTGCACAGAATCCTTCCACATTGAATCCCATTCAGGATCCCAAGCGGAATCAGGTCATTGATTTTCCTGGAGGAGCAGTAGAATTCATCCCTGAAATGAGGTTTATATCTGAATCATCTAAAGAGAGAATACCCTGCTATCGTGTCCTTGATGAGAATGGGCAGCCAATTTTGGGCCAGAATTTTATGCAGGTCAATGAGGAAGTTGCTGTTAAGATGTATACTAACATGGTTACTCTCCGATCTATGGACACTATCTTCTATGAAGCACAAAGGCAAGGTAGAATATCATTTTATGTGACAGCAATTGGAGAGGAGGCTACCAATGTTGCTTCAGCTGCAGCCCTTGCCATGGATGATGTTGTTTTCCCTCAGTATAGGGAAGCGGGAGTCTTGTTATGGCGTGGTTTCACTCTGCAAGAATTTGCAAACCAGTTATTTTccaataaatatgataatggGAAAGGAAGGCAGATGCCAGCTCATTATGGGTCCGACAAGCACAATTACTTTACAGTAGCATCAACTATTGCTACACAAATTTCCCATGCTGTTGGAGCTGCTTATTCCTTAAAGATGGATAAAAAGAATGCATGTGCTGTCACTTACTTTGGTGATGGTGGCTCAAGTGAGGGAGATTTCCACGCTGCTTTAAATTTTGCAGCGGTTATGGAGGCCccagttatttttatatgtcgGAACAATGGATGGGCTATCAGTACCCCCATTTCAGATCAATTTCGAAGTGATGGTGTTGTCGTGAAAGGACAGGCATATGGAGTCCGTAGCATTCGTGTAGATGGCAATGATGCCCTGGCCATCCATAATGCTGTTCAAGCTGCTCGTCAAATGGCAATTACTGAAGAGAGACCAATTCTAATAGAAGCTCTTACATATAGAGTGGGACACCACACCACATCAGATGACTCTACCAAGTATCGTCCAGCGAATGAGATTGAATGGTGGAGAGTGGCACGTGATCCTGTGGCTAGATTTAGAAAGTGGATAGAAAGGAATGGCTGGTGGAATGATACGGCTCAGTCAGAGCTTATGAACAATGTGAGACAACAGCTTCTACATACAATTCAAGTCGCAGAGAGTGTAGAAAAACCTCCATTTGCAGATACTTTTAGTGATGTTTATGATGTCCCTCCATCCAATCTCCGTGAACAGGAGCAATGGTTGAAGGAGTTTGTAAAGAAACATCCACAAGAATATCCAACAAATATTTCTGTGTAG 1440 0.4215 MGKFSTILSRFKSKTKFSVGLHRSSWTSRSRTTPLCPSQPHLNSSYLTQNRDSLLFSLLSSRRFASTTAQNPSTLNPIQDPKRNQVIDFPGGAVEFIPEMRFISESSKERIPCYRVLDENGQPILGQNFMQVNEEVAVKMYTNMVTLRSMDTIFYEAQRQGRISFYVTAIGEEATNVASAAALAMDDVVFPQYREAGVLLWRGFTLQEFANQLFSNKYDNGKGRQMPAHYGSDKHNYFTVASTIATQISHAVGAAYSLKMDKKNACAVTYFGDGGSSEGDFHAALNFAAVMEAPVIFICRNNGWAISTPISDQFRSDGVVVKGQAYGVRSIRVDGNDALAIHNAVQAARQMAITEERPILIEALTYRVGHHTTSDDSTKYRPANEIEWWRVARDPVARFRKWIERNGWWNDTAQSELMNNVRQQLLHTIQVAESVEKPPFADTFSDVYDVPPSNLREQEQWLKEFVKKHPQEYPTNISV 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2551 479 Pfam Dehydrogenase E1 component 143 438 IPR001017 GO:0016624
Ssu1g2551 479 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA 2, MITOCHONDRIAL 60 478 - -
Ssu1g2551 479 Gene3D - 82 478 - -
Ssu1g2551 479 CDD TPP_E1_PDC_ADC_BCADC 140 432 - -
Ssu1g2551 479 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL 60 478 - -
Ssu1g2551 479 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 112 474 IPR029061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2551 Ssu-Chr1 70012348 70018069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2551 9 317 Acyl Lipid Metabolism Gene Families AT5G09300 65.300 5.67e-139 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2551 K00166 - gmx:100779198 796.193