Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2543 ATGGCCTTGGGGAAATATACTAGAGTAGATGGTAGAAGATCATCGAGTTGCTGTTCAACGGTGACTATTGTTGTATTTGTGGCTCTATGCTTGGTTGGGGTTTGGATGATGACATCATCTTCAGTTGTCCCTGTGCATAATGGAGACAAGGCTCAGGAGAATAAGAGTGAGGTGAAAGAACAAACAGAGGTGAAAGAATCGGTGAGTGAGATCAGCAATAGCAATACTCGGCAGTTTGAAGATAATCCAGGTGATTTGCCTGAGGATGCAACCAAGGGGGACAGCAGTGTAACCTCTGAAGACAACTCGAACCTGTCAgaaaaacaagaagagaagTTGGAGGAAAATCCTGCAGAGAAGTCTTCTGAAGATACAAAGACAGAAGACGTGGACAAGAAAATCGAGGAGGAAGGTTCTAATACAGAAAATGAATCAAACTCAGACTCTGCTGAAAATAACAAAGATAGTGGCGAGACTTCCACTAAGGAATCTGATTCTGACGAGAGTGAAAAGAAATTTGAATCAGATGATAACAAGAAGTCTGATTCAGATGAGAGTGAAAAGCAATCTGATAACTCTGATGAAACAACAGATAGTAAGATAGAGGAGAAGGTGGAACAAAGTGATAACAAAGAATCTGATGAAAACTCTAGTGAGAAGAATACAAATGATGATACCAAACAGCAGAGTTCAAATGAGGTATACCCTTCTGGGGCTCAGTCAGAGCTTCAAGATGAAAGTACAACACAAACTGGGTCTTGGTCAACCCAAGCAGCAGAGTCTAAGAATGAAAAGGAGTCTCAAGAATCCTCCAAGCAGCCAACTGGGTACAATTGGAAGCTTTGCAATGTCACTGCTGGTCCCGATTTTATCCCATGCCTTGACAACTGGAAAGCTATTAGGAGTCTCCGGAGTACTAAACACTATGAACATCGAGAAAGGCACTGTCCTGAAGAACCTCCTACCTGCTTCGTTCCTCTTCCTGAAGGATATAAACGCCCAATTAAGTGGCCTGAAAGCAGAGAGAAGATATGGTATTACAATGTTCCACACACCAAGCTTGCTGAAGTTAAGGGCCACCAGAATTGGGTGAAAGTTATGGGCGAGTACCTTACTTTTCCTGGTGGTGGAACCCAATTCAAGCATGGGGCGCTTCATTACATTGACTTTATACAAGAGACTGTACCTGACATTGCTTGGGGCAAACGCACACGTGTTATACTAGATGTTGGATGTGGTGTTGCCAGCTTTGGAGGTTTTCTATTTGAAAGAGATGTACTTGCAATGTCACTTGCCCCAAAGGATGAACATGAAGCTCAGGTACAATTTGCACTTGAAAGGGGGATTCCTGCTATATCTGCTGTGATGGGCACAAAGAGACTTCCCTTCCCTGGGAAAGTATTTGATGTAGTCCATTGTGCACGATGTAGAGTTCCATGGCATATAGAAGGTGGTAAACTTCTTTTGGAGCTGAATAGAGTATTGCGACCTGGTGGGTTTTTTGTATGGTCTGCTACTCCTATTTATCAGAAGCTTCCTGAAGATGTTCAAATATGGAATGCCATGAAGGCACTAACAAAAGCAATGTGCTGGGAAGTTGTGTCAATCAGCAAGGATCAAGTAAATGGAGTAGGTGTAGCCGTATACAGGAAGCCAATTTCTAACGAGTGTTATGAGCAACGTTCCAAGAATGAGCCTCCGCTGTGTCCAGACTCTGATGATCCTAATGCGGCATGGAACATTCAATTGCAAGCCTGCATACACAAAGCGCCAGTTAGTTCAACAGAAAGAGGGTCACAATTGCCAGAGAAGTGGCCAGCCAGACTGACCAAAGTGCCTTATTGGTTGTTGAGTTCCCAAGTTGGAGTTTATGGAAAGCCTGCCCCCGAAGATTTCACTGCTGATTATGAACACTGGAAACGTGTAGTGTCCAAGTCTTATCTAAATGGGATGGGAATTCAATGGTCAAATGTACGCAATGTCATGGATATGAGATCTATCTATGGAGGATTTGCTGCAGCTTTGAGAGATTTGAATGTTTGGGTCATGAATGTGGTTACAATAGACTCCGCAGATACTCTTCCCATTATTTATGAACGAGGTCTTTTTGGCATATATCATGATTGGTGTGAATCATTTAGCACCTATCCTAGGTCCTATGATCTCCTCCATGCTGATCATCTGTTTTCAAAGCTTCAGAAAAGGTGCAATTTGGCTGCTGTAGTGGCTGAGGTTGATCGGATTCTTAGGCCTGAAGGAAAACTTATTGTTCGTGACACTGTTGAGATCATTGAAGAGCTTGAGAGCATGGTAAGGTCTATGCAGTGGAAGGTTCGCATGACTTACTCCAAGGAGAAGGAGGGCTTGTTATGTGTGCAGAAGTCCATGTGGCGACCTAAGGAGCAGGAAAAGCTTGAGTATGCTATTATTTAA 2433 0.4291 MALGKYTRVDGRRSSSCCSTVTIVVFVALCLVGVWMMTSSSVVPVHNGDKAQENKSEVKEQTEVKESVSEISNSNTRQFEDNPGDLPEDATKGDSSVTSEDNSNLSEKQEEKLEENPAEKSSEDTKTEDVDKKIEEEGSNTENESNSDSAENNKDSGETSTKESDSDESEKKFESDDNKKSDSDESEKQSDNSDETTDSKIEEKVEQSDNKESDENSSEKNTNDDTKQQSSNEVYPSGAQSELQDESTTQTGSWSTQAAESKNEKESQESSKQPTGYNWKLCNVTAGPDFIPCLDNWKAIRSLRSTKHYEHRERHCPEEPPTCFVPLPEGYKRPIKWPESREKIWYYNVPHTKLAEVKGHQNWVKVMGEYLTFPGGGTQFKHGALHYIDFIQETVPDIAWGKRTRVILDVGCGVASFGGFLFERDVLAMSLAPKDEHEAQVQFALERGIPAISAVMGTKRLPFPGKVFDVVHCARCRVPWHIEGGKLLLELNRVLRPGGFFVWSATPIYQKLPEDVQIWNAMKALTKAMCWEVVSISKDQVNGVGVAVYRKPISNECYEQRSKNEPPLCPDSDDPNAAWNIQLQACIHKAPVSSTERGSQLPEKWPARLTKVPYWLLSSQVGVYGKPAPEDFTADYEHWKRVVSKSYLNGMGIQWSNVRNVMDMRSIYGGFAAALRDLNVWVMNVVTIDSADTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSKLQKRCNLAAVVAEVDRILRPEGKLIVRDTVEIIEELESMVRSMQWKVRMTYSKEKEGLLCVQKSMWRPKEQEKLEYAII 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2543 810 CDD AdoMet_MTases 407 502 - -
Ssu1g2543 810 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 312 561 IPR029063 -
Ssu1g2543 810 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 188 805 IPR004159 GO:0008168
Ssu1g2543 810 PANTHER PMT26-LIKE PROTEIN, PUTATIVE-RELATED 4 68 - -
Ssu1g2543 810 PANTHER PMT26-LIKE PROTEIN, PUTATIVE-RELATED 188 805 - -
Ssu1g2543 810 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 289 794 IPR004159 GO:0008168
Ssu1g2543 810 MobiDBLite consensus disorder prediction 104 140 - -
Ssu1g2543 810 MobiDBLite consensus disorder prediction 50 66 - -
Ssu1g2543 810 MobiDBLite consensus disorder prediction 45 277 - -
Ssu1g2543 810 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 4 68 IPR004159 GO:0008168
Ssu1g2543 810 MobiDBLite consensus disorder prediction 223 261 - -
Ssu1g2543 810 MobiDBLite consensus disorder prediction 67 81 - -
Ssu1g2543 810 Gene3D Vaccinia Virus protein VP39 379 583 IPR029063 -
Ssu1g2543 810 MobiDBLite consensus disorder prediction 148 222 - -
Ssu1g2543 810 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 626 790 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2543 Ssu-Chr1 69906515 69911009 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2543 - - gmx:100816312 1396.33