Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2541 ATGTCTCCCCTAACGGAATTAAGTGCTTCCACTCTTGTACTTTACCCTGCATCACAGCCACAAGAGCCCAGAGATGAGAATAATGGGGGGTTAGTTTTTGACTCAAATTTGGTGCAAATGCAAGGGGACATGCCCAAAGAGTTCCTTTGGCCATCTGGGGACTTGGTTAACACCACCCAAGAGGAGCTGAAGGAGCCCCTTGTGGATTTAGGGATCGTGAAGAATGGTGATGAGGAAGCCATTGCCAATGCTGCAGAGCTTGTAAGGAAAGCCTGCTTGAAGCATGGCTTCTTCCAAGTGATCAACCATGGTGTGGACCCAGATCTCATAGATGCTGCCTATCACGAAATCGACTCCATTTTCAAGCTCCCAGTGAGCAAAAAGCTCGGTGCTAAGAGGAAACCTGGGGGAGTCACGGGCTACTCCGGAGCTCATGCAGATCGTTATTCGTCCAAGTTGCCATGGAAAGAGACGTTTTCTTTCCTCCATGATCACGGAGGCATCTCCAACTCCCAGATTGTTGACTACTTCAGGTCTGTCCTAGGCGAGGACCTTCAACACACAGGGTGGGTGTATCAAAAGTACTGTGAAGCAATGAAGGAATTATCTTTAGTAATTATGGAGCTCTTGGCCATTAGTTTGGGCGTGGATCGTCTGCATTATCGAAGATTTTTTCAAGATGGTCACTCAATAATGAGGTGCAACTATTATCCACCTTGCAACAGTGCCAGCCTCACCTTAGGCACTGGCCCTCACACTGATCCAACCTCACTAACCATTCTTCATCAAGACCAAGTTGGAGGTTTAGAGGTTTTTGTAGATAACAAATGGCTGGCTGTTCGTCCTCGATCTGAAGCCTTAGTCATAAACATAGGTGACACTTTCATGGCGTTGTCAAATGGGAGATACAAGAGTTGTCTACACAGGGCATTGGTTAACACATACAGGGAGAGAAGGTCACTGGTTTACTTTGTGTGTCCAAGAGAAGACAAGGTAGTGAGGCCCCCAGACAATCTGTTATGCAGAAATGAGCAAAGGAAGTACCCTGATTTCACATGGTCCAATTTGTTTGAATTCACACAGAAGCACTATAGGGCTGATGTGGCCACGCTCCAAAGCTTCATTGAGTGGCAATGCTCTTCCAAGCCATCCAACTTCTAG 1161 0.4686 MSPLTELSASTLVLYPASQPQEPRDENNGGLVFDSNLVQMQGDMPKEFLWPSGDLVNTTQEELKEPLVDLGIVKNGDEEAIANAAELVRKACLKHGFFQVINHGVDPDLIDAAYHEIDSIFKLPVSKKLGAKRKPGGVTGYSGAHADRYSSKLPWKETFSFLHDHGGISNSQIVDYFRSVLGEDLQHTGWVYQKYCEAMKELSLVIMELLAISLGVDRLHYRRFFQDGHSIMRCNYYPPCNSASLTLGTGPHTDPTSLTILHQDQVGGLEVFVDNKWLAVRPRSEALVINIGDTFMALSNGRYKSCLHRALVNTYRERRSLVYFVCPREDKVVRPPDNLLCRNEQRKYPDFTWSNLFEFTQKHYRADVATLQSFIEWQCSSKPSNF 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2541 386 Gene3D - 35 359 IPR027443 -
Ssu1g2541 386 SUPERFAMILY Clavaminate synthase-like 41 366 - -
Ssu1g2541 386 Pfam 2OG-Fe(II) oxygenase superfamily 229 327 IPR044861 -
Ssu1g2541 386 Pfam non-haem dioxygenase in morphine synthesis N-terminal 66 164 IPR026992 -
Ssu1g2541 386 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 228 327 IPR005123 -
Ssu1g2541 386 PRINTS Isopenicillin N synthase signature 88 105 - -
Ssu1g2541 386 PRINTS Isopenicillin N synthase signature 252 273 - -
Ssu1g2541 386 PRINTS Isopenicillin N synthase signature 287 313 - -
Ssu1g2541 386 PANTHER GIBBERELLIN 20 OXIDASE 1-B-LIKE 23 381 - -
Ssu1g2541 386 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 23 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2541 Ssu-Chr1 69883517 69887808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2541 43 365 Glycosyltransferase AT5G59530 28.446 7.62e-29 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2541 K05282 - gmx:100816834 719.539