Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2524 ATGGTAGAAAATGCTTCAAGAACAAACCTTAGCTGCCGTCGAGATTATGACATTGAGGAGGACTCCATAGTTGGCGTGCCTTTAAAAAGTGACTCCGAATGCTATGACGATGATGGCCGTGTTAAACGAACAGGAACCGTTTGGACCACAAGCTCCCACATAATAACAGGTGTGGTAGGATCTGGGGTGCTCTCCTTAGCCTGGGCAATTGCTCAGATGGGTTGGATTGCTGGTCCTGTAGTCATGCTCTTATTCAGCATAGTCACTTTGTATACTTCATCCTTTCTAGCTGATTGTTATCGTACTGGTGACCCCAAATTTGGAAAGAGAAATTATACTTTCATGGACGCAGTTAGCACCATTCTAGGCGGGTACAATGTTACGTTTTGTGGGATAGTTCAGTACTTGAATCTTTTCGGAAGTGCAATAGGATACACAATTGCGGCTTCCCTTAGCATGATGGCAATCAAAAGGTCTGGCTGTATCCAGTCCTCTGATGGAGAAAACCCATGTCATATTTCAAGTAACCCATACATGATCGGTTTTGGTGCAATgcaacttttcttttctcaaatccCAGATTTTCATAACATTTGGTGGCTCTCAATAGTTGCTGCTGTCATGTCTTTTACCTATTCCATAATTGGTCTTGTTCTTGGAATTGCCAAAATTGCAGAAACGGGAACTTTCAAGGGTAGCCTCACTGGAATAAGCATTGGAACTGTGACAGAGGCGCAAAAAGTATGGGGTGTTTTCCAAGCTCTTGGTAACATAGCCTTCGCCTATTCATATTCTTTCGTTCTCCTTGAAATTCAGGATACCATCAGATCTCCGCCGTCTGAAGTAAAAACAATGAAGAAGGCTGCAAAGTTAAGTATTGGAGTGACCACAATATTTTATATGCTTTGTGGCTGCGTAGGCTATGCTGCTTTTGGAGATTCAGCACCTGGGAACCTGCTCACTGGATTTGGTTTCCATAAACTATATTGGCTTACAGATATTGCTAATGCTGCTATCGTAATTCACCTTGTGGGGGCATACCAAGTGTATGCCCAACCCCTCTTTGCCTTCGTTGAGAAGGAAGCAGCAAAAAGATGGCCCAAAATTGACAAGGAATTCAAAATTTCAGTTCCTGGTTTGCGACCCTACAATCAGAACATATTTGTCCTAGTTTGGAGGACAGTGTTTGTGATCATAACCACTGTTATATCAATGTTGCTTCCATTCTTCAACGACGTTTTGGGAGTGATTGGAGCACTGGGGTTTTGGCCTTTAACTGTCTACTTTCCTGTGGAGATGTATATCTTGCAAAAGAGGATCCCAAAATGGAGTAGGAGATGGATTTGTCTGGAATTGTTGAGTGTGGTCTGCCTCATAGTAACTATCGTTGCTGGTCTTGGCTCAGTGGTCGGTATGGTTGAAAACGCTTCCAGAACCAACCTTAGACGCCATCAAGATTTTGGCATGGAGCCTCACTCCATAGATGGTGTTCATCCACAAACTGACTCCAAATTCTTCGACGATGATGGCCATGTTAAACGAACAGGAACCATTTGGACCACAAGCTCCCACATAATAACAGCTGTGGTGGGTTCTGGGGTGCTCTCTTTAGCATGGGCCATGGCTCAAATGGGTTGGGTTGCTGGGCCTGCAGTTATGATTTTCTTCAGCGTTGTTACGTTGTATACGACGTCGCTTCTGGCCGATTGTTATCGTTGCGGTGACCCCGTTTCTGGGAAGAGAAACTATACTTTCATGGAAGCAGTTCAATCCATTCTCGGTGGCTACTATGATACGTTTTGCGGGATAGTTCAATACTCAAATCTTTACGGGACTGCCATAGGATACACAATTGCGGCTTCTATTAGCATGATGGCGATAAAAAGGTCCAACTGTTTCCATTCTTCGGGCGGAAAAAATCCATGTCACATTTCAAGCAACCCATACATGATCGGTTTTGGCATAATCCAAATtgtattttctcaaattccagattttcataaaacatggTGGCTCTCGATAGTTGCAGCAATCATGTCTTTTGCTTATTCCACAATTGGCCTTGCTCTTGGAATCGCCAAAGTTGCAGAAACGGGTACTTTCAAAGGTAGTCTCACGGGAGTAAGGATTGGAACTGTGACAGAGGCCCAAAAAGTCTGGGGGGTTTTCCAAGGTCTTGGTGACGTAGCCTTCGCCTATTCATATTCTCAAATCCTCATTGAAATTCagGACACCATAAAATCTCCACCATCTGAAGCAAAGACAATGAAGAAGGCAGCTAAGATAAGTATTGGAGTAACCACAACATTTTATATGCTTTGTGGCTTCATGGGTTATGCTGCTTTTGGAGACACAGCACCTGGGAACTTGCTCACTGGATTTGGTTTTTATAACCCATATTGGCTTATAGATATTGCTAATGCTGCTATCGTAATTCACCTTGTGGGAGCATACCAAGTGTATGCCCAGCCCCTTTTTGCCTTTGTCGAGAAATGGGCTGCACAAAGATGGCCCACAGTTGACATGGAACACAAAATTCAATTTCCTGGTTTTCATCCTTACAATCTAAGCCCATTTAGATTAGTTTGGAGAACGGTGTTTGTTATCATAACCACTATTATAGCAATGTTGATTCCATTCTTCAATGACATTTTGGGACTTCTTGGAGCACTGGGGTTTTGGCCTTTAACTGTTTTTTTCCCAGTACAGATGAGTATCAAACAAAAGAGGATCCAAAAGTGGAGTGGGAGATGGATTGGCATGCAAATTTTAAGTGTTGTCTGCCTCGTAGTATCAGCTGCAGCTGCTATTGGCTCAGTTGCCAGTATCGTTATTGACCTACAGAAATACAAACCGTTCCATGTAGACTATTAA 2874 0.4235 MVENASRTNLSCRRDYDIEEDSIVGVPLKSDSECYDDDGRVKRTGTVWTTSSHIITGVVGSGVLSLAWAIAQMGWIAGPVVMLLFSIVTLYTSSFLADCYRTGDPKFGKRNYTFMDAVSTILGGYNVTFCGIVQYLNLFGSAIGYTIAASLSMMAIKRSGCIQSSDGENPCHISSNPYMIGFGAMQLFFSQIPDFHNIWWLSIVAAVMSFTYSIIGLVLGIAKIAETGTFKGSLTGISIGTVTEAQKVWGVFQALGNIAFAYSYSFVLLEIQDTIRSPPSEVKTMKKAAKLSIGVTTIFYMLCGCVGYAAFGDSAPGNLLTGFGFHKLYWLTDIANAAIVIHLVGAYQVYAQPLFAFVEKEAAKRWPKIDKEFKISVPGLRPYNQNIFVLVWRTVFVIITTVISMLLPFFNDVLGVIGALGFWPLTVYFPVEMYILQKRIPKWSRRWICLELLSVVCLIVTIVAGLGSVVGMVENASRTNLRRHQDFGMEPHSIDGVHPQTDSKFFDDDGHVKRTGTIWTTSSHIITAVVGSGVLSLAWAMAQMGWVAGPAVMIFFSVVTLYTTSLLADCYRCGDPVSGKRNYTFMEAVQSILGGYYDTFCGIVQYSNLYGTAIGYTIAASISMMAIKRSNCFHSSGGKNPCHISSNPYMIGFGIIQIVFSQIPDFHKTWWLSIVAAIMSFAYSTIGLALGIAKVAETGTFKGSLTGVRIGTVTEAQKVWGVFQGLGDVAFAYSYSQILIEIQDTIKSPPSEAKTMKKAAKISIGVTTTFYMLCGFMGYAAFGDTAPGNLLTGFGFYNPYWLIDIANAAIVIHLVGAYQVYAQPLFAFVEKWAAQRWPTVDMEHKIQFPGFHPYNLSPFRLVWRTVFVIITTIIAMLIPFFNDILGLLGALGFWPLTVFFPVQMSIKQKRIQKWSGRWIGMQILSVVCLVVSAAAAIGSVASIVIDLQKYKPFHVDY 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2524 957 PANTHER OS05G0424000 PROTEIN-RELATED 477 950 - -
Ssu1g2524 957 Pfam Transmembrane amino acid transporter protein 514 944 IPR013057 -
Ssu1g2524 957 Pfam Transmembrane amino acid transporter protein 43 473 IPR013057 -
Ssu1g2524 957 PANTHER OS05G0424000 PROTEIN-RELATED 5 472 - -
Ssu1g2524 957 PANTHER TRANSMEMBRANE AMINO ACID TRANSPORTER FAMILY PROTEIN 477 950 - -
Ssu1g2524 957 PANTHER TRANSMEMBRANE AMINO ACID TRANSPORTER FAMILY PROTEIN 5 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2524 Ssu-Chr1 69529028 69545769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2524 485 957 Organic Solute Cotransporters AT5G09220 68.134 0.0 702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2524 K24917 - gmx:100813602 903.279