Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2514 ATGAATTCAAAGATGAAGTCAGGGAAGTTGGGATTATTGGTACTGCTAGTCTTGCTCAGCTCCTCTACTTGTTCAGCTTGGTTTGGTAGTAAACACAAAAGTTCCGGTGCAAGTTCAAGTTCAAGTGCAAGTGGAAGGAACTCCATTCGTCCAGATGAAGCCTCATCAtcatcgtcgtcgtcgtcgtcgtcacCATTCTTACTAAACCGTTTTCGTTCTAGCTCGTCCGTCGTGTTCCCGGTTCACGGCAATGTTTACCCTGTTGGGTTTTATAATGTTACTCTCAACATCGGCCACCCACCCAGGCCATATTTTCTTGATATTGACACGGGTAGCGACCTCACGTGGCTTCAATGTGATGCCCCTTGTTCCCGTTGCTCTCAGACGCCCCATCCGCTTTACAGGCCCAGCAATGACTTAGTGCCCTGCAGGCATCCCCTCTGTGCATCCTTGCACCACAATGATAACTACGACTGTGAAGTCCCCCATCAATGTGACTACGAAGTTGAGTATGCAGATCATTACTCATCCCTTGGTGTACTTGTCCATGATGTCTACACTCTTAACTTTACAAATGGAGTCCAACTTAAAGTTCGTATGGCCCTTGGATGTGGATATGATCAGATTTTTCCAGACCCTTCTCACCACCCGTTAGATGGAATGCTTGGCCTTGGCAGGGGAAAAACCAGCTTGACATCACAGCTGAATAGTCAGGGTATGGTGCGAAATGTGATTGGACACTGTTTGAGTGCACAAGGAGGAGGGTATATCTTCTTTGGAGACGTTTATGATTCTTCTAGACTGACTTGGACTCCAATGTCAACCAGAGATTACAAACATTACTCAACAGCAGGGGCAGCTGATCTCCTTTTTGGAGGGAAGAAAACTGGGGTTGGAAATCTTTTTGCTGTTTTTGACACTGGGAGTTCTTACACGTACTTCAACTCTTATGCTTACCAAGCACTAATTTCTTGGTTGAGGAAGGATTTAGCTGGAAAGCCCCTAAAAGAAGCACATGATGATCAAACTCTCCCTCTCTGTTGGCATGGTAAAAGACCTTTCAGAAGCATATATGAAGTGAGAAAATACTTCAAGCCAATCGCACTTAGTTTCACCAGCAATGGGAGAAGTAAAGCTCAGTTTGAAATGCCTCCTGAAGCATATCTGATAATATCAAACATGGGAAATGTTTGCTTGGGCATTCTAAACGGCTCTGAAGTAGGGATGGGGGATCTGAACCTAATTGGAGACATATCCATGTTAAACAAAGTGATGGTATTTGACAACGACAAGCAGTCGATTGGTTGGACACCGGCGGATTGTGACCGGGTTCCGAAATCCAGAGATGTCAGCATTTGA 1359 0.4415 MNSKMKSGKLGLLVLLVLLSSSTCSAWFGSKHKSSGASSSSSASGRNSIRPDEASSSSSSSSSSPFLLNRFRSSSSVVFPVHGNVYPVGFYNVTLNIGHPPRPYFLDIDTGSDLTWLQCDAPCSRCSQTPHPLYRPSNDLVPCRHPLCASLHHNDNYDCEVPHQCDYEVEYADHYSSLGVLVHDVYTLNFTNGVQLKVRMALGCGYDQIFPDPSHHPLDGMLGLGRGKTSLTSQLNSQGMVRNVIGHCLSAQGGGYIFFGDVYDSSRLTWTPMSTRDYKHYSTAGAADLLFGGKKTGVGNLFAVFDTGSSYTYFNSYAYQALISWLRKDLAGKPLKEAHDDQTLPLCWHGKRPFRSIYEVRKYFKPIALSFTSNGRSKAQFEMPPEAYLIISNMGNVCLGILNGSEVGMGDLNLIGDISMLNKVMVFDNDKQSIGWTPADCDRVPKSRDVSI 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2514 452 SUPERFAMILY Acid proteases 83 444 IPR021109 -
Ssu1g2514 452 Gene3D Acid Proteases 261 445 IPR021109 -
Ssu1g2514 452 ProSiteProfiles Peptidase family A1 domain profile. 91 437 IPR033121 -
Ssu1g2514 452 Pfam Xylanase inhibitor N-terminal 91 261 IPR032861 -
Ssu1g2514 452 Pfam Xylanase inhibitor C-terminal 302 437 IPR032799 -
Ssu1g2514 452 MobiDBLite consensus disorder prediction 29 65 - -
Ssu1g2514 452 PANTHER ASPARTYL PROTEASES 6 446 IPR001461 GO:0004190|GO:0006508
Ssu1g2514 452 Gene3D Acid Proteases 67 260 IPR021109 -
Ssu1g2514 452 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 6 446 - -
Ssu1g2514 452 PRINTS Pepsin (A1) aspartic protease family signature 97 117 IPR001461 GO:0004190|GO:0006508
Ssu1g2514 452 PRINTS Pepsin (A1) aspartic protease family signature 413 428 IPR001461 GO:0004190|GO:0006508
Ssu1g2514 452 PRINTS Pepsin (A1) aspartic protease family signature 303 314 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2514 Ssu-Chr1 69361582 69364725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2514 61 447 Miscellaneous Gene Families AT1G44130 52.806 1.20e-147 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2514 - - gmx:100812524 792.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2514 1 69361582 69364725 Ssu1g2514 1 69361582 69364725 ECH