Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2509 ATGGACATGGACCGGAGGAGTTGGCTATGGCGCAGGAAGTCATCGGAGAAAAGTCCAGGTGAAACTGAGAGTTCTGGCTCAGTGTCATCTCATTCAGAAAGATTCTCTGATGATCAGGTATATCCCACCCAAACTACTCCGTCTCCAGAAGTCATGTGTGAGGCTGCACCAAATGATGAAGAAGCTACTGATGTGAGGACTCTAACAGAAAAATTATCCGCCGCTCTCTTAAACTGTAGTGCCAAAGAAGACTTGGTAAAGCAACATGCCAAAGTTGCCGAAGAAGCTGTCTCAGGCTGGGAGAAGGCTGAAACAGAAGTATCGATTTTAAAACAACAACTTGACGCTGCAAAACAGAAAAACTCAGTTCTCGAAGACCAACTTAGTCATCTTAACGGGGCACTCAAGGAGTGTATGAGGGAGCTTCGACAAGCTACAGAAGAACAAGAGCAAAAGATTCATGAAGCTGTAACAAATAACTCTTATGGCTTGGAATCCAAAAGACCTGATCATGAGTGGAATGTTGTTGATGCTGCATCAGTTCATTTTGATCTTCACCAGAGGCTTGAGGATATGGAGAAAGAGAATTCAAGTCTTAAAATAGAGCTACAATCTCGACTCGAGGAATTAGAGTTCAGGACCATGGAGAGGGATTTGAGTACTCAAGCTGCTGAAGCAGCAAGCAAGCAACATTTGGAGAGTATAAAGAAGGTGGCTAAGCTTGAAGCTGAGTTCCGTAGACTGAAAGCTATGGCTCGCAAAACATTCTCTGCTAATGACCACAGGTCTATGGCTGCCTCTTTAGTTTATGTAGAGTCTTTTACTGATAGTATGTCAGATATTGGAGAGAGGCAACTGGTAGTTGAAAGTGATATGCAGAAATTAGGAGGTTGGGATATGAATGAAGGTGAGCCAAGCCATTATGACTCATGGCCATCGGCTTTAATAACAGACCTTGATCAGTTTAAGAATGAAAGCACTACTGGGAAAAATCATATGGTCTTTTCAACTGAGCTCAATCTGATGGATGATTTCCTTGAAATGGAAAGGCTTGCTGCATTGCCAGATACTGAAAGTGTAAGCAGTTTTCCTGTGGTAGGTACTGCATCTGACCAACTTAATATTGGCCATGACACAAAGAATGCTGAAGTGGAAGCTATGGTTCAAAAGAATGCTACATTGGAAAAGAAACTAGAGAAAATGGAGGCAGATAAACTTGAGCTAGAGATGGATCTAACCAAGTGCCAACAGCAGCTTGAAGCATCACTGAGTAGGATGAAGGAAGTGGAGTTGGAGGTAGTAGAGCTTCAAACTAAGTTAGCTCTTGCAAACAAATCAAATGAAGAAGCgtatgaaaaactaaaagcaaCTCAAGAAAAGAATGAGATGGCTGAGTCAAAACTCAGAGTTGCTCAAACTGAAGCAGAAGAATTGGTTTCAAAAATTTGTTCATTAGAGGAAGAGATTGAGAAAGAGCGAGCTTTGTCTGCTGAGAATTTGGCCAAGTGTGGGAAGTTGGAGGATGAGCTCTTGAGAATGAAGAATGAAGCTCAACTCCACAAAGACGCTGAGATTCTGCATGGAGAAGGTGTTAATAGTGAGTTAAAGCAGGAGAAGGAACTAGCATTGGCTGCTAGTAAATTTGCTGAGTGCCGGAAAACCATCGAATCTCTTGGACTGCAGTTAAAGTCCCTTGCAACATTGGAAGACTTCCTACTTGATTCAGAGAGCCCTATGGAGTTAACTTGTGAAGTTAAACCAGGTCCCCAGAATGGAGATGAGCAATTGAAGTTACATAATAGTGATTTGAGTTTGTCCAAAAGAGATTCTGAACCTTCAGTTTCAATAAACCCATCTATTACCCAAAAAAAACCCGTAATAGTTTTGGTAGGTTCAACCCAAGAAGCAAGAGTGTAA 1917 0.4158 MDMDRRSWLWRRKSSEKSPGETESSGSVSSHSERFSDDQVYPTQTTPSPEVMCEAAPNDEEATDVRTLTEKLSAALLNCSAKEDLVKQHAKVAEEAVSGWEKAETEVSILKQQLDAAKQKNSVLEDQLSHLNGALKECMRELRQATEEQEQKIHEAVTNNSYGLESKRPDHEWNVVDAASVHFDLHQRLEDMEKENSSLKIELQSRLEELEFRTMERDLSTQAAEAASKQHLESIKKVAKLEAEFRRLKAMARKTFSANDHRSMAASLVYVESFTDSMSDIGERQLVVESDMQKLGGWDMNEGEPSHYDSWPSALITDLDQFKNESTTGKNHMVFSTELNLMDDFLEMERLAALPDTESVSSFPVVGTASDQLNIGHDTKNAEVEAMVQKNATLEKKLEKMEADKLELEMDLTKCQQQLEASLSRMKEVELEVVELQTKLALANKSNEEAYEKLKATQEKNEMAESKLRVAQTEAEELVSKICSLEEEIEKERALSAENLAKCGKLEDELLRMKNEAQLHKDAEILHGEGVNSELKQEKELALAASKFAECRKTIESLGLQLKSLATLEDFLLDSESPMELTCEVKPGPQNGDEQLKLHNSDLSLSKRDSEPSVSINPSITQKKPVIVLVGSTQEARV 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2509 638 Coils Coil 384 481 - -
Ssu1g2509 638 MobiDBLite consensus disorder prediction 1 19 - -
Ssu1g2509 638 MobiDBLite consensus disorder prediction 20 51 - -
Ssu1g2509 638 MobiDBLite consensus disorder prediction 1 62 - -
Ssu1g2509 638 Coils Coil 224 244 - -
Ssu1g2509 638 Coils Coil 182 209 - -
Ssu1g2509 638 Pfam Filament-like plant protein, long coiled-coil 302 361 IPR008587 -
Ssu1g2509 638 Pfam Filament-like plant protein, long coiled-coil 181 254 IPR008587 -
Ssu1g2509 638 Pfam Filament-like plant protein, long coiled-coil 82 173 IPR008587 -
Ssu1g2509 638 Pfam Filament-like plant protein, long coiled-coil 383 567 IPR008587 -
Ssu1g2509 638 PANTHER FILAMENT-LIKE PLANT PROTEIN 3 610 - -
Ssu1g2509 638 Coils Coil 100 159 - -
Ssu1g2509 638 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 3 610 - -
Ssu1g2509 638 Coils Coil 503 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2509 Ssu-Chr1 69294618 69297870 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2509 - - gmx:100810372 1030.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2509 1 69294618 69297870 Ssu1g2509 1 69294618 69297870 ECH