Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2503 ATGTGGCGTCGAAGCTTCTCGAAACTCCTCCTCAGAGCTTCGGGATTAGGGTTTCCGACGCGATCGTTCTCGCGCGAGCCGGGGAAGAGGTTCGCCGCGCTGTGGGGAAACGGCGATTACGGGAGATTGGGTCTTGGCAACTTGGATTCGCAATGGAAACCCGTCGTTTGCCCCGCGTTCCGCAACCAAACCCTTAAGGCCATTGCTTGTGGCGGTGCTCACACCCTCTTCTTAACAGATGATGGATGCGTTTATGCTACTGGTCTTAATGATTTTGGGCAGCTTGGAGTATCAGAGAGTGAGCACTACTCAGTGGAGCCACTTCGTGTTTttggagaggagaagaaaattgTGCAGATTTCTGCTGGTTATAATCATTCTTGTGCGATAACAGTGGATGGAGAACTATACATGTGGGGAAAGAATACAAGTGGGCAGCTTGGACTTGGAAAAAGGGCTCCAAACATAGTTCCTTTGCCAACTAAAGTGGAATATTTGGATGGAATCAACATTAAAATGGCAGCTCTGGGTTCAGAGCACTCAGTGGCTATCAGTGATAGTGGAGAGGCCTTTAGTTGGGGAATGGGAGTGTCTGGTAGACTTGGTCATGGTCATGAGTCAAGCATCCTAGGATTCTTCAAAAGCAACAGTGAGTATACCCCAAGGCTTATAAAGGATCTTGAAGGAATCAAGGTAAAATACGTAGCTGCTGGCTTGCTAAATTCAGCTTGTACTGATGAAAATGGTTCTGTTTTTATATTTGGTGAAAGAGGAATTGAAAAATGGCGTTTAAAGGAGATGAGCATTGCAACAAGACCATCCTTGATCAGTGAACTTCCATTCTCAAAAGAAGTTGCTTGTGGTGGATATCACACCTGTGTCCTGACAAATTCTGGTGAGCTTTATACTTGGGGTTCAAATGAAAATGGCTGCCTTGGTATTGGttcCTCAGATGTCATTCATCTACCTGAAAAGGTTCAAGGGCCATTCTTGAAGTCTTCTGTTAGCCAGGTTTCTTGTGGTTGGAAGCATACTGCAGCCATTTCTGAAGGAAGAGTGTTCACGTGGGGCTGGGGAGGTTCCAATGGAACTTTCTCTGAAGTTGGACATTCTTCAAGTGGACAATTGGGTCATGGAAGTGATGTGGACTATATAAATCCTGCAAGAGTTTGCTTTGGAGAAGACGTGAAAGCATTGCAAGTTTCATGTGGGTTCAATCATACTGGTGCTATACTTGAATATGCATAG 1248 0.4471 MWRRSFSKLLLRASGLGFPTRSFSREPGKRFAALWGNGDYGRLGLGNLDSQWKPVVCPAFRNQTLKAIACGGAHTLFLTDDGCVYATGLNDFGQLGVSESEHYSVEPLRVFGEEKKIVQISAGYNHSCAITVDGELYMWGKNTSGQLGLGKRAPNIVPLPTKVEYLDGINIKMAALGSEHSVAISDSGEAFSWGMGVSGRLGHGHESSILGFFKSNSEYTPRLIKDLEGIKVKYVAAGLLNSACTDENGSVFIFGERGIEKWRLKEMSIATRPSLISELPFSKEVACGGYHTCVLTNSGELYTWGSNENGCLGIGSSDVIHLPEKVQGPFLKSSVSQVSCGWKHTAAISEGRVFTWGWGGSNGTFSEVGHSSSGQLGHGSDVDYINPARVCFGEDVKALQVSCGFNHTGAILEYA 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2503 415 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 188 248 IPR000408 -
Ssu1g2503 415 PANTHER UBIQUITIN-PROTEIN LIGASE E3A-RELATED 28 415 - -
Ssu1g2503 415 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 82 133 IPR000408 -
Ssu1g2503 415 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 134 187 IPR000408 -
Ssu1g2503 415 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 299 351 IPR000408 -
Ssu1g2503 415 Gene3D - 158 414 IPR009091 -
Ssu1g2503 415 Pfam Regulator of chromosome condensation (RCC1) repeat 187 239 IPR000408 -
Ssu1g2503 415 Pfam Regulator of chromosome condensation (RCC1) repeat 81 130 IPR000408 -
Ssu1g2503 415 Pfam Regulator of chromosome condensation (RCC1) repeat 369 411 IPR000408 -
Ssu1g2503 415 Pfam Regulator of chromosome condensation (RCC1) repeat 298 348 IPR000408 -
Ssu1g2503 415 Pfam Regulator of chromosome condensation (RCC1) repeat 35 78 IPR000408 -
Ssu1g2503 415 Pfam Regulator of chromosome condensation (RCC1) repeat 133 184 IPR000408 -
Ssu1g2503 415 PRINTS Chromosome condensation regulator RCC1 signature 174 190 IPR000408 -
Ssu1g2503 415 PRINTS Chromosome condensation regulator RCC1 signature 346 367 IPR000408 -
Ssu1g2503 415 PRINTS Chromosome condensation regulator RCC1 signature 84 100 IPR000408 -
Ssu1g2503 415 PRINTS Chromosome condensation regulator RCC1 signature 190 204 IPR000408 -
Ssu1g2503 415 PRINTS Chromosome condensation regulator RCC1 signature 65 78 IPR000408 -
Ssu1g2503 415 PRINTS Chromosome condensation regulator RCC1 signature 31 47 IPR000408 -
Ssu1g2503 415 PRINTS Chromosome condensation regulator RCC1 signature 288 306 IPR000408 -
Ssu1g2503 415 PRINTS Chromosome condensation regulator RCC1 signature 134 150 IPR000408 -
Ssu1g2503 415 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 249 298 IPR000408 -
Ssu1g2503 415 PANTHER OS11G0545800 PROTEIN 28 415 - -
Ssu1g2503 415 SUPERFAMILY RCC1/BLIP-II 34 332 IPR009091 -
Ssu1g2503 415 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 30 81 IPR000408 -
Ssu1g2503 415 Gene3D - 28 157 IPR009091 -
Ssu1g2503 415 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 351 414 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2503 Ssu-Chr1 69115383 69129987 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2503 - - vun:114196144 796.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2503 1 69115383 69129987 Ssu1g2503 1 69115383 69129987 ECH