Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2494 ATGGCAGGGGCTTCGAATTCGAAGATTGAGTTCTTGGTGTGGCTGTCGCAACTGATGGGAGGTCTTTGTTCGCGGTCCGCGGAGGATGACCAGGTGTTTGTCAACGcggctgctgctgctgctgagAATAAACCTAGCGACGAGGCCACTGTTTTCACGACCGCGCCGCAGAGAATGGAGAGGAATCTTCCAGAACCTTCTAGAACCGACGGGGGAGCTTCTACGACTGTGGACGAAGAGTTCTACGACGGAATCCCGCGCTTCCCCGAGGACTCTTTGCCTCACAAGCCTAGGTCAAAGGTCTCAGAGGTGAGTTTACGCTTGGGCAAAGCTGGATTTGGGATGGCAGTAGAGGTTTTGGACACTCTTGGGAGCAGCATGACAAATTTAAATGCTAGCAGTGGGATTAACAGAGAATTAAATGCTCAAAGACTGTCAAGAGACGAGGCAGAATCAATAATGCAACAATTGATGACTTTGGTTCAATTTACAGCTGAATTGTACCATGAATTACATGCTTTGGATAGATTTGAACAAGATATTCAGCACAAATGTGAGGAGGATGATCAGAGAGGTGATAGCCTTGCATTCTTGAGGGCGGaaattaaaagtcaaaagaAGCAAATTAgacatttaaagaaaaaatcacttTGGTCTAGAAGTTTAGAGGAGGTTATGGAGAAGCTTGTAGACATTGCCCATTTTTTGCACTTGGAGATAAGCAATGCCTTTGGCAATGCAGATGGCCACAAACCATTAATTGGACACATGAGCAATTGCCAAAGATTGGGCCCTGCAGGCCTCGCTTTGCATTATGCAAATATAGTGCTTCAAATTGATACTCTTGTAGCCAAATCCACTATGCCTACAAATACAAAGGATGCCTTGTATCAAAGCTTGCCTCCTCATATAAAATTAGCTCTGCGTTCCAAATTACCATCCCTCCGTGTTGTAGAAGAGCTAACTGTAGCCGATATCACAGATGAGATGGAGAAAACATTACATTGGTTGGTCCCCATGGCCACTAACACATCCAAAGCACGTCGTAGATATGGTGGGGTAGGGGAGTGGGCAAACACAGGATCTGAGGTCAATAGGAAGATTGGTGTAATGCGGATTGAGACATTCCACCATGCAGATAAAGACAAAGtggaatattatatttttgaacttCTCGTATGGCTTCATTGCTTGTCCATCAGATGTAAGGCTGACAATGATACTGGCTAA 1230 0.4276 MAGASNSKIEFLVWLSQLMGGLCSRSAEDDQVFVNAAAAAAENKPSDEATVFTTAPQRMERNLPEPSRTDGGASTTVDEEFYDGIPRFPEDSLPHKPRSKVSEVSLRLGKAGFGMAVEVLDTLGSSMTNLNASSGINRELNAQRLSRDEAESIMQQLMTLVQFTAELYHELHALDRFEQDIQHKCEEDDQRGDSLAFLRAEIKSQKKQIRHLKKKSLWSRSLEEVMEKLVDIAHFLHLEISNAFGNADGHKPLIGHMSNCQRLGPAGLALHYANIVLQIDTLVAKSTMPTNTKDALYQSLPPHIKLALRSKLPSLRVVEELTVADITDEMEKTLHWLVPMATNTSKARRRYGGVGEWANTGSEVNRKIGVMRIETFHHADKDKVEYYIFELLVWLHCLSIRCKADNDTG 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2494 409 Pfam Protein of unknown function (DUF668) 262 345 IPR007700 GO:0045927
Ssu1g2494 409 PANTHER OS01G0873900 PROTEIN 136 409 IPR045021 GO:0045927
Ssu1g2494 409 PANTHER OS01G0873900 PROTEIN 10 136 IPR045021 GO:0045927
Ssu1g2494 409 MobiDBLite consensus disorder prediction 44 76 - -
Ssu1g2494 409 Coils Coil 195 215 - -
Ssu1g2494 409 PANTHER DUF668 FAMILY PROTEIN 10 136 - -
Ssu1g2494 409 PANTHER DUF668 FAMILY PROTEIN 136 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2494 Ssu-Chr1 68908316 68939817 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2494 - - gmx:100779607 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2494 1 68908316 68939817 Ssu1g2494 1 68908316 68939817 ECH