Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2490 ATGAGTTCCTTCCACGCCTCCCAAGCCCGCACCAAACCCGCTCCGGCCCCAGTCCCTCGCCAACTCGCTCCATCCGATCACTCCCACCCCATGCCGCCGCCCACCTTCCGCTTCCGCTCCCTCTCCAGCTGCGGCCACAGCCGCCCCTCCTCCGCCTCCGTGCAGCGATCCGCGTCCGCCAGGTTCTCCCGGCAGAGCACCACGCGCAACGAGGTCATGCTGAACGACATCGTCGGGAACGGCATCTCCGGCATCCTGCACAAGTGGGTCAACTACGGGCGCGGGTGGCGCCCCCGCTGGTTCGTCCTCCACGACGGCGTCCTCTCCTACTACAAGATTCACGGCCCCGATAAGCTCGTCCTCAACCGCGACGTCGAGACCGCCGCCAAGGTCATCGGCGAAGAGTCCCTCCGCCGCATCAACAGCCACCGCCACTGCCCCTCCCGCAATCGCAAACCCGTCAGCGAAATCCACCTCATGGTGTGTTCGGTGCGAGAGAACAAGTCAGACGAGAGGAGGTTTTCTGTGTGTACGGGGACGAAGAAGAGGCTGTATTTGAGGGCGGAGAGCAGGGAAGATAGAGAGACGTGGGTGGAGGCAATGATGGCGGTGAAGGACATGTATCCTCGCATGTCCAACTCAGAGCTTATGTCACCCGTCGCGTCGGTCGTGATTTCCACGGAGAGGTTGAGAGACCGGCTTTTACTGGAGGGTGTCAGTGAGGCTGCTATTAGGGAAAGTGAGGAAATCATGAGATCCGAGTTCTCCCAGTTGCACAATCATATTGTGGCTCTCAAGCAGAAGCAGTTGCTACTAATGGACACGCTGCGCCATTTAGAGGCAGAGAAGGTGGACTTGGAGAACACACTTGTTGAAGACCAGAGGCAATCAAAGGATGAAACAGATCCCTATCTATCAACGCAAGAAAAGTATAGTGAGGGAAGTGGTGGTGATTCTTCTGATGAGAACGATAGGCATGATCACTCTGACGATGACGACGATGCGTTCTTTGATACATGTGAAATTCTTTCAACAAGTTCTGACCACCTGAGATCCTGCCATGATTCTGACCGTGAAGAGACTACTCCAAATGGGATATGTGATGAAAAATCCCCGATTGGATCTGTTGGATTTAACTATCCTCATATCAAGCGACGAAAGAAGTTGCCTGATCCTGTTGAGAAAGAGAGTAGTGTCAGTCTATGGTCAATTATAAAAGACAATATCGGGAAGGATCTTACAAAAGTTTGTCTTCCAGTTTACTTTAATGAGCCTCTCTCCTCATTGCAGAAATGTTTTGAAGATCTGGAGTACTCTTACCTTCTAGACCAAGCAAATGAATGGGGTAAAATgGGTGACAGTCTAATGAGGATGCTACATTTGGCTGCATTTGCAGTTTCGGGGTATGCTAGCACCAGTGGTAGAAGTTGCAAACCATTTAATCCGCTGTTGGGCGAGACATATGAAGCAGAGTATCCAGACAAAGGCATTCGCTTTATCTCTGAGAAGGTCAGTCATCACCCCATGATTGTTGCATGCCATTGTGAGGGCAGTGGCTGGAAATTTTGGGGAGACagcaatttaaaaagtaaattttgggGTCGTTCAATCCAGCTTGATCCTGTTGGTATATTGACCATAGAATTTGAAGACGGAGAAGTCTTTCATTGGAGCAAGGTAACCACATCCATTTACAACCTCATTTTAGGAAAACTCTACTGCGACCATTATGGTACAATGCGGGTAGAGGGAAACCGTGAGTATTTATGTAAGATCAAATTCAAGGAGCAGTCAATCATTGATAGAAACCCTCACCAGATTCACGGCATAGTGGAAGATAAGAAAGGTAGAACAGTGGCAACTCTATTTGGGAAGTGGGATGAGAGCTTGCATTACGTAATTGGAGGGAATTCTGGCAAAGGAAAAGGGTCCAATGTGTCATCAAAACCACATCTTCTGTGGAAGCGGAGCCCGACACCTGAGTACCAGACAAGATATAACCTCACACAATTTGCTATTACACTAAATGAAATCACACCTGGACTAAAGGAGAAGTTGCCACCGACAGATTCAAGGCTAAGACCTGATCAAAGGTGTTTGGAGAATGGGCAGCATGAAATGGCCAACTCTGAGAAGTTGCGGCTGGAACAAAGACAGCGGCAGGCACGGAAGATGCAAGAGAAGGGTTGGAAACCAAGGTGGTTTGCTAAGGAAAAAGGCAGCAATACTTACCGTTATGTTGGAGGGTATTGGGAGACCAGGGAAAAGGGGAACTGGGAATCTTGTCCTGACATTTTTGGTCAAGTCTCAACCGATACTGAGTTTAACCCAACTCCATAA 2340 0.4932 MSSFHASQARTKPAPAPVPRQLAPSDHSHPMPPPTFRFRSLSSCGHSRPSSASVQRSASARFSRQSTTRNEVMLNDIVGNGISGILHKWVNYGRGWRPRWFVLHDGVLSYYKIHGPDKLVLNRDVETAAKVIGEESLRRINSHRHCPSRNRKPVSEIHLMVCSVRENKSDERRFSVCTGTKKRLYLRAESREDRETWVEAMMAVKDMYPRMSNSELMSPVASVVISTERLRDRLLLEGVSEAAIRESEEIMRSEFSQLHNHIVALKQKQLLLMDTLRHLEAEKVDLENTLVEDQRQSKDETDPYLSTQEKYSEGSGGDSSDENDRHDHSDDDDDAFFDTCEILSTSSDHLRSCHDSDREETTPNGICDEKSPIGSVGFNYPHIKRRKKLPDPVEKESSVSLWSIIKDNIGKDLTKVCLPVYFNEPLSSLQKCFEDLEYSYLLDQANEWGKMGDSLMRMLHLAAFAVSGYASTSGRSCKPFNPLLGETYEAEYPDKGIRFISEKVSHHPMIVACHCEGSGWKFWGDSNLKSKFWGRSIQLDPVGILTIEFEDGEVFHWSKVTTSIYNLILGKLYCDHYGTMRVEGNREYLCKIKFKEQSIIDRNPHQIHGIVEDKKGRTVATLFGKWDESLHYVIGGNSGKGKGSNVSSKPHLLWKRSPTPEYQTRYNLTQFAITLNEITPGLKEKLPPTDSRLRPDQRCLENGQHEMANSEKLRLEQRQRQARKMQEKGWKPRWFAKEKGSNTYRYVGGYWETREKGNWESCPDIFGQVSTDTEFNPTP 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2490 779 MobiDBLite consensus disorder prediction 40 66 - -
Ssu1g2490 779 Gene3D - 80 208 IPR011993 -
Ssu1g2490 779 MobiDBLite consensus disorder prediction 290 331 - -
Ssu1g2490 779 Gene3D - 486 663 - -
Ssu1g2490 779 SUPERFAMILY PH domain-like 82 216 - -
Ssu1g2490 779 Coils Coil 708 728 - -
Ssu1g2490 779 Pfam Oxysterol-binding protein 400 755 IPR000648 GO:0008289
Ssu1g2490 779 PANTHER OSBP(OXYSTEROL-BINDING PROTEIN)-RELATED PROTEIN 1C 25 771 - -
Ssu1g2490 779 MobiDBLite consensus disorder prediction 290 306 - -
Ssu1g2490 779 MobiDBLite consensus disorder prediction 350 370 - -
Ssu1g2490 779 Coils Coil 276 296 - -
Ssu1g2490 779 Pfam Pleckstrin homology domain 87 201 - -
Ssu1g2490 779 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 25 771 IPR000648 GO:0008289
Ssu1g2490 779 Gene3D - 697 767 - -
Ssu1g2490 779 MobiDBLite consensus disorder prediction 315 331 - -
Ssu1g2490 779 ProSiteProfiles PH domain profile. 79 206 IPR001849 -
Ssu1g2490 779 SMART PH_update 80 208 IPR001849 -
Ssu1g2490 779 SUPERFAMILY Oxysterol-binding protein-like 395 769 IPR037239 -
Ssu1g2490 779 MobiDBLite consensus disorder prediction 1 66 - -
Ssu1g2490 779 MobiDBLite consensus disorder prediction 350 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2490 Ssu-Chr1 68834774 68842760 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2490 K20456 - gmx:100807703 1330.47