Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2454 ATGGATCACGTGCTCGTGGCTCTGGGCGAGACGAAGGAAGAGAGGGAGGTTCGAATTCGGAGCCTGTTTAATTTCTTCGACGCGGCGAACAACGGTTACTTGGACTACGCTCAGATAGAAGCAGGGTTATCGGCGCTGCAAATCCCGCCGGAGTACAAGTACGCGAGGGAGCTCTGCGAGGTTTGCGACGCCAACAGCGATGGCAGGGTGGAGTACCACGAGTTCCGCCGTTACATGGACGCTAAGGAATTGGAGCTTTACCGCATATTCCAAGCCATTGATGTTGAACACAACGGCAACATTCTCCCTGAAGAGCTCTATGATGCTCTTCTCAAAGCTGGGATTGAAATGGATGATGAGGAGCTTGCTCGCTTTGTGGAGCATGTTGATAAGGATAATAATGGAATTATCACTTTTGAAGAATGGAGAGATTTTCTTCTACTTTACCCTCATGAAGCAactattgaaaatatatatcatcattGGGAGAGGGTGTGCCTTGTTGACATTGGAGAGCAAGCTGTCATTCCTGAAGGTATCAGCAAGCATGTGAACCAGAGCAAATATTTACTTGCCGGTGGAATAGCAGGAGGTATTTCTCGTACAGCAACTGCTCCTCTTGATCGTCTGAAGGTAGTATTACAAGTTCAAACTACACGTGCTGATATTTTGCCAGCGGTAATGAAGATATGGAAGCAAGATGGTCTGTTAGGATTTTTCCGGGGTAAtggattgaatgttgtgaaGGTAGCACCAGAAAGTGCCATCAAATTTTATGCTTTTGAAAAGCTGAAAAATGTAATTGGAGGGGCTGAAAGCAACAAGTCAGATATTGGTACTGCTGGGAGGCTTTTTGCAGGGGGTACGGCTGGTGCAGTTGCACAGGCTGCTATCTATCCACTGGATCTTATTAAAACTAGGTTACAGACATGTGCCTCTGAAGGTGGAAGGGGTCCTAAGTTGGGAACACTTACCATGAATATATGGGTTCAAGAGGGACCTCGAGCTTTCTACAGAGGGCTTGTTCCATCTCTACTTGGCATGATTCCTTATGCAGCCATTGATCTCACTGCTTATGATACCTTGAAAGATATATCCAGGAGATATATTCTTCATGATAGTGAACCTGGTCCTCTAGTGCAACTAGGATGTGGGACAATTTCTGGGACTGTTGGAGCTACTTGTGTCTATCCACTGCAGGTTATTCGAACAAGACTGCAGGCACAACCTTCCAACACTTCCGATGCTTACAAGGGGATGTTTGATGCCTTTCGGAAAACTTTTCAGCTTGAAGGCTTTACAGGTTTCTACAAGGGACTCTTCCCAAATCTCCTCAAAGTTGTGCCAGCTGCAAGCATTACTTATATGGTCTACGAAAGTATGAAGAAGAGTCTGGATCTGGATTAG 1407 0.4478 MDHVLVALGETKEEREVRIRSLFNFFDAANNGYLDYAQIEAGLSALQIPPEYKYARELCEVCDANSDGRVEYHEFRRYMDAKELELYRIFQAIDVEHNGNILPEELYDALLKAGIEMDDEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHHWERVCLVDIGEQAVIPEGISKHVNQSKYLLAGGIAGGISRTATAPLDRLKVVLQVQTTRADILPAVMKIWKQDGLLGFFRGNGLNVVKVAPESAIKFYAFEKLKNVIGGAESNKSDIGTAGRLFAGGTAGAVAQAAIYPLDLIKTRLQTCASEGGRGPKLGTLTMNIWVQEGPRAFYRGLVPSLLGMIPYAAIDLTAYDTLKDISRRYILHDSEPGPLVQLGCGTISGTVGATCVYPLQVIRTRLQAQPSNTSDAYKGMFDAFRKTFQLEGFTGFYKGLFPNLLKVVPAASITYMVYESMKKSLDLD 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2454 468 Pfam EF-hand domain pair 85 144 IPR002048 GO:0005509
Ssu1g2454 468 ProSiteProfiles EF-hand calcium-binding domain profile. 117 152 IPR002048 GO:0005509
Ssu1g2454 468 ProSiteProfiles EF-hand calcium-binding domain profile. 14 49 IPR002048 GO:0005509
Ssu1g2454 468 ProSiteProfiles EF-hand calcium-binding domain profile. 81 116 IPR002048 GO:0005509
Ssu1g2454 468 Gene3D Mitochondrial carrier domain 180 466 IPR023395 -
Ssu1g2454 468 SUPERFAMILY Mitochondrial carrier 182 459 IPR023395 -
Ssu1g2454 468 SMART efh_1 85 113 IPR002048 GO:0005509
Ssu1g2454 468 SMART efh_1 18 46 IPR002048 GO:0005509
Ssu1g2454 468 SMART efh_1 54 82 IPR002048 GO:0005509
Ssu1g2454 468 SMART efh_1 121 149 IPR002048 GO:0005509
Ssu1g2454 468 ProSitePatterns EF-hand calcium-binding domain. 130 142 IPR018247 -
Ssu1g2454 468 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 35 466 - -
Ssu1g2454 468 Gene3D - 7 163 - -
Ssu1g2454 468 PANTHER SOLUTE CARRIER FAMILY 25 35 466 - -
Ssu1g2454 468 PRINTS Mitochondrial carrier protein signature 202 216 IPR002067 GO:0055085
Ssu1g2454 468 PRINTS Mitochondrial carrier protein signature 385 407 IPR002067 GO:0055085
Ssu1g2454 468 PRINTS Mitochondrial carrier protein signature 189 202 IPR002067 GO:0055085
Ssu1g2454 468 PRINTS Mitochondrial carrier protein signature 338 356 IPR002067 GO:0055085
Ssu1g2454 468 PRINTS Mitochondrial carrier protein signature 242 262 IPR002067 GO:0055085
Ssu1g2454 468 PRINTS Mitochondrial carrier protein signature 293 311 IPR002067 GO:0055085
Ssu1g2454 468 ProSiteProfiles Solute carrier (Solcar) repeat profile. 278 365 IPR018108 -
Ssu1g2454 468 SUPERFAMILY EF-hand 8 182 IPR011992 -
Ssu1g2454 468 Pfam Mitochondrial carrier protein 277 365 IPR018108 -
Ssu1g2454 468 Pfam Mitochondrial carrier protein 377 465 IPR018108 -
Ssu1g2454 468 Pfam Mitochondrial carrier protein 185 269 IPR018108 -
Ssu1g2454 468 ProSiteProfiles Solute carrier (Solcar) repeat profile. 184 267 IPR018108 -
Ssu1g2454 468 ProSiteProfiles Solute carrier (Solcar) repeat profile. 376 464 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2454 Ssu-Chr1 68167871 68170696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2454 1 468 EF-hand Containing Proteins AT5G51050 74.894 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2454 K14684 - gmx:100801703 862.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2454 1 68167871 68170696 Ssu5g2948 5 76213090 76215832 ECH
Ssu1g2454 1 68167871 68170696 Ssu1g2454 1 68167871 68170696 ECH