LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu1g2438	ATGGAGAGCAATGGTTTGTGTGTATGGGTTATACTCTTGTTGGGGTGCGTCCTTTCCTCGGAATCCAAGTATATAAGGTACGACACAACGTCGACCATTGTTCCTGGGAAGCTCAACGTTCACTTGGTCCCTCACAGTCACGACGATGTTGGATGGTTGAAGACCATTGACCAATACTATGTCGGTTCCAACAACTCAATTCAGGGAGCGTGCGTTCAAAACGTGCTCGATTCCCTGGTACCCGCGTTGCTGGCAGACAAGAATCGCAAGTTCATATATGTTGAACAGGCGTTTTTCCAGCGATGGTGGATGGAACAAAGTGATGCTATCCAGAACATAGTCAAGGAGCTGGTCAAGTCTGGTCAATTGGAGTTCATAAATGGTGGTTTTTGTATGCATGATGAGGCTGCTGCTCATTACATTGACATGATTGATCAGACAACTCTTGGACATCAATTTCTCAAAGAAGAATTTGGGGTGACTCCCAGAATAGGATGGCAGATTGATCCATTTGGACATTCTGCAGTGCAGGCCTACTTGTTGGGAGCAGAGGTTGGATTTGACTCTCTATTCTTTGCACGGATTGACTACCAAGACAGGGCTaagagaaaagatgaaaaaactCTTGAAGTTGTGTGGCGGGGCTCTAAGAGCCTTGGTTCATCATCACAGATATTTTCTGGTGCGTTCCCCGAGAATTATGAACCTCCCAGTAATTTCTACTATGAAGTAAATGATGATTCTCCCATTGTTCAGgATGATGTCAATTTATTTGATTACAATGTCCCTGAAAGAGTAAATGAATTTGTTGCAGCCGCAATATCACAGGCCAATATTACACGCACAAATCATATAATGTGGACAATGGGGACAGATTTCAAGTACCAATATGCACATACCTGGTTTCGGCAAATGGACAAGTTTATTCACTATGTTAATCAAGATGGCCGGGTTCATGCCCTATACTCAACCCCATCAATATATACTGATGCCAAACATGCTGCAAATGAGGCATGGCCAATCAAGACAGATGACTTCTTTCCGTATGCAGATCGTGTAAATGCCTATTGGACAGGGTATTTTACAAGCAGGCCAGCTCTCAAAGGTTATGTCAGATTGATGAGTGGCTACTACTTGGCAGCAAGGCAGTTGGAGTATTTCAAAGGGAAGAGTGCCTTAGGTCCCAAAACTGACTCTTTGGCTGATGCTTTGGCTATTGTTCAACACCATGATGCGGTATCTGGTACAGAAAAGCAACATGTTGCTAATGATTATGCTAAACGGCTTTCAATAGGTTACACAGAGGCTGAGAAAGTTGTTGCAGTATCACTTGCTTGTTTGACAGAGGGAGCAACCAAAACAGGTTGTAGGAACccacatattaaatttcaacagTGTCCACTTCTGAACATAAGTTACTGTCCTGCATCAGAAGTTGACTTCTCAAATGGGAAAAACCTGGTTGTTGTCGTTTACAATCCTCTGGGATGGAAAAGAGAGGATATCATAAGGATTCCTGTCGTCAATGAAAAGGTTGTTGTTCGGGATTCCAGTGGGAAAAAAATCCAATCCCAGCTGGTGCCAATACCTGATGCCTTTCTTGGTTTAAGAAACTACCACACTGTGGCATACTTGGGAGTGTCTCCAACTGTAAAACCCAAATACTGGCTTGCTTTTTCAGCAACTGTTCCCCCACTTGGTTTTAGCACTTACTATGTATCCAATGCCAAAAAATCAGCTACTATTTCAGATAGACATACAGCTTACAAGTCATGGAATAAGAGTGATACACTTACAGTGGGCCTAAAAAACTTGAAACTAACTTATTCTGTGAAGGAAGGGAAAATTAGTCAATATATCAACAGCAGAAGCAAGGTCAAAGAATCTCTAGAGCAGGCATATAAATTTTACACCGGGTATGGAAATAAATCAAAGGATGGAACAGAAACTCCTCAGGCGTCTGGAGCATATATTTTTCGCCCTGATGGTTCACCATCTCCCCTCAGATCCAACGGGAAGGCTCCTCTCACAATTTTTCGGGGACCAATTGTGCATGAAGTGCATCAGAAGATCAATTCATGGATATACCAGACCACTAGACTGTACAAGGGCAAAGAACATGCTGAAGTTGAGTTtattGTTGGCCCTATACCCATTGATGATGGACTTGGCAAAGAAATTGCAACTGAGATTAAAACAAATCTGGCAAGCAGCAAAACCTTCTATACTGATTCCAATGGACGTGATTTCATTGAACGTGTTCGAGACTATAGAAAAGACTGGAACTTGGAAGTAAATCAACCTGTTGCTGGAAATTATTACCCTATCAACCTTGGGATTTACCTGAAAGATAAAAGCAAAGAGTTCTCTATATTGGTAGATAGAGCTGTGGGGGGCGCCAGCATCATAGATGGACAATTGGAGCTAATGGTTCATAGGAGGTTAGTTCAGGATGATTCCAGAGGTGTTGGAGAGGCACTGAATGAAACAGTTTGCATCCATGATAAGTGCACTGGGTTAACTGTGCTAGGAAAGTACTATTTCAGAATTGATCCTGTAGGAGAGGGTGCTAGATGGCGTCGATCATTTGGTCAGGAGATATACTCTCCCTTGCTTTTAGCCTTCACAGAGAGTGAAGGTGACTGGGGAGATTCTCACGTCACAGCCTTCTCGGGAATAGATTCCTCATACAACTTACCAGATAACGTTGCAATAATAACCCTCCAGGATCTGGGTGATGGAAAAGTTCTCTTTCGGCTGGCACACTTATACGAGATTGACGAGGACAAGGATCTTTCGGTTAAGGCAACTGTAGAACTTAAAAAGGTGTTTCCCGACAAACAGataaacaaaataactgaAGTGAGCTTATCAGCTAACCAAGAAAGAGCAGAAATGGAGAGGAAGAGATTGGTTTGGCAAGTTAAAGGGTCACCCCAAGAACCCAAGGTGTGGAGAGGAGGACCAGTAGATTCAGAAAAGCTAGTTGTAGAACTTGCTCCTATGGAAATACGgacttttattatcaattttggGCACTAA	3042	0.4195	MESNGLCVWVILLLGCVLSSESKYIRYDTTSTIVPGKLNVHLVPHSHDDVGWLKTIDQYYVGSNNSIQGACVQNVLDSLVPALLADKNRKFIYVEQAFFQRWWMEQSDAIQNIVKELVKSGQLEFINGGFCMHDEAAAHYIDMIDQTTLGHQFLKEEFGVTPRIGWQIDPFGHSAVQAYLLGAEVGFDSLFFARIDYQDRAKRKDEKTLEVVWRGSKSLGSSSQIFSGAFPENYEPPSNFYYEVNDDSPIVQDDVNLFDYNVPERVNEFVAAAISQANITRTNHIMWTMGTDFKYQYAHTWFRQMDKFIHYVNQDGRVHALYSTPSIYTDAKHAANEAWPIKTDDFFPYADRVNAYWTGYFTSRPALKGYVRLMSGYYLAARQLEYFKGKSALGPKTDSLADALAIVQHHDAVSGTEKQHVANDYAKRLSIGYTEAEKVVAVSLACLTEGATKTGCRNPHIKFQQCPLLNISYCPASEVDFSNGKNLVVVVYNPLGWKREDIIRIPVVNEKVVVRDSSGKKIQSQLVPIPDAFLGLRNYHTVAYLGVSPTVKPKYWLAFSATVPPLGFSTYYVSNAKKSATISDRHTAYKSWNKSDTLTVGLKNLKLTYSVKEGKISQYINSRSKVKESLEQAYKFYTGYGNKSKDGTETPQASGAYIFRPDGSPSPLRSNGKAPLTIFRGPIVHEVHQKINSWIYQTTRLYKGKEHAEVEFIVGPIPIDDGLGKEIATEIKTNLASSKTFYTDSNGRDFIERVRDYRKDWNLEVNQPVAGNYYPINLGIYLKDKSKEFSILVDRAVGGASIIDGQLELMVHRRLVQDDSRGVGEALNETVCIHDKCTGLTVLGKYYFRIDPVGEGARWRRSFGQEIYSPLLLAFTESEGDWGDSHVTAFSGIDSSYNLPDNVAIITLQDLGDGKVLFRLAHLYEIDEDKDLSVKATVELKKVFPDKQINKITEVSLSANQERAEMERKRLVWQVKGSPQEPKVWRGGPVDSEKLVVELAPMEIRTFIINFGH	1013

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu1g2438	1013	MobiDBLite	consensus disorder prediction	645	667	-	-
	Ssu1g2438	1013	Pfam	Glycosyl hydrolases family 38 N-terminal domain	39	350	IPR000602	GO:0004559\|GO:0006013
	Ssu1g2438	1013	Gene3D	-	475	599	IPR013780	-
	Ssu1g2438	1013	PANTHER	ALPHA-MANNOSIDASE	11	1012	-	-
	Ssu1g2438	1013	SUPERFAMILY	Families 57/38 glycoside transferase middle domain	354	448	IPR028995	-
	Ssu1g2438	1013	SUPERFAMILY	Glycoside hydrolase/deacetylase	27	351	IPR011330	GO:0005975
	Ssu1g2438	1013	CDD	GH38N_AMII_LAM_like	38	314	-	-
	Ssu1g2438	1013	Gene3D	-	887	1013	-	-
	Ssu1g2438	1013	Pfam	Alpha mannosidase middle domain	355	447	IPR015341	GO:0004559\|GO:0006013
	Ssu1g2438	1013	Gene3D	Glycoside hydrolase family 38, central domain	398	453	IPR037094	GO:0004559\|GO:0006013
	Ssu1g2438	1013	SUPERFAMILY	Galactose mutarotase-like	459	1011	IPR011013	GO:0003824\|GO:0005975\|GO:0030246
	Ssu1g2438	1013	Pfam	Glycosyl hydrolases family 38 C-terminal beta sandwich domain	902	1008	IPR041147	-
	Ssu1g2438	1013	Gene3D	Glycoside hydrolase 38, N terminal domain	38	318	IPR027291	-
	Ssu1g2438	1013	Pfam	Glycosyl hydrolases family 38 C-terminal domain	604	821	IPR011682	GO:0004559\|GO:0006013
	Ssu1g2438	1013	Gene3D	Glycoside hydrolase family 38, central domain	319	397	IPR037094	GO:0004559\|GO:0006013
	Ssu1g2438	1013	SMART	Alpha_mann_mid_2	355	429	IPR015341	GO:0004559\|GO:0006013
	Ssu1g2438	1013	PANTHER	ALPHA-MANNOSIDASE	11	1012	-	-
	Ssu1g2438	1013	Gene3D	-	600	869	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu1g2438	Ssu-Chr1	67849001	67857700	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu1g2438	6	925	Glycoside Hydrolase	AT5G13980	70.098	0.0	1361

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu1g2438	K01191		-	gmx:100798150	1921.36

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu1g2438	1	67849001	67857700	Ssu1g2438	1	67849001	67857700	ECH