Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2428 ATGGATCGGAGGAGAAACGCGAGTCCGGTGTACGCGCGGCAGTGGAGCGGCGGTTCCAGCAGCACCGGCTCGTCGTCGCCGGCGATGTCGCCGGCTCATCCTCAGTCGCGCCTCGGTCCTTCCTCCACCGTTCTCTCCACCGTAAAGCGCACGCAAAACGTGGCCGCCAAAGCCGCCGCGCAGCGCCTCGCGCGCGTCATGGCGTCTCAGAACGCCGCCGCGGACGACGGCGAGGACGACGACGATCTCGATTTCCGGTTCAGCGCTCCGCCTCCTGCctctctttcttccttctccGGCAACGCCAACAGTAACAGGAGTGCCAGCGCTAATGCCACCGTCATTCCTCCGATTTCGGTAGCGAGGCCTAACAGATCTCCGTCTCCTGCGttAGGTCGGAACTTTGCAGAGCATACTCATTCGGTTCGTTCAACGTCAGCTGGAAGATCGGCGGTTTCAGTTCGCTCAGCGGCAGCGGTGCCACCGAACAAATCCACACTCCGAGCGCCTATGGCTATACCTCCTATTGACCCTCCTACCAATCGGAATAGAGAGAAAAGGTTTACATCAGATATATCTATCAGACCAGTTAACTCGAAAGACACAGGAGATCAGCGTGAAGCTTCTGCACTCCGTGATGAACTTGATATGCTCCAAGAAGAGAATGAGGTTTTATTAGAAAAGCTAAGACAAGCAGAGGAAAAACGCCAAGAAGTGGAGGCCAGAACTAGGGAACTTGAGAAACAGGTTGCTTCTCTTGGAGAAGGTGTATCCTTGGAAGCTAAATTGCTGAGCAGGAAGGAAGCTGCTTTGCGTCAAAGAGAGGCTGCTCTCAAGGCTGCTCAACAAACACAGAGTGGGAGAGATGAGGATATCACAGCCCTTCAAGTGGAAATTCAGAACCTAAAAGATGATGCTGCAGCAGCTTTGGAACAACAGCAAGAAGCTGAAGCTGAAGCAAATGCTCTTCGCACAATGACACAGAGAATGATTTTGACCCAAGAAGAAATGGAGGAAGTTGTCCTGAAGAGATGTTGGCTAGCCCGCTACTGGGGTCTTGCTGTAAAACATGGTATATGTGCAGATATAGCGCAATCCAAGCATGAACATTGGTCTTCTCTAGCTCCTCTTCCTTTTGAACTTGTCAGCTCTGCTGGACAGAAGGCTAAAGAGGAATCTTGGAACAAAAGTGCTGATGGTCCAGATAGAAGCAAACTTGTTCGTGATTTGAATGATCTTGCTGGGGAAGGAAATATTGAGAGTATGCTTTCAGTTGAGATGGGTTTGAGAGAACTTGCTTCCTTAAAGgttGAGGATGCTGTTGTGCTTGCATTAGCCCAACACAGACGGCCAAATTTGGTTCGGCAGTCCATTTTAGaTTCCAAATCACATGGTGATGCCAAATATTCAGAGGCATTTGAATTAAGTGAAGAGGAAGCAGAAGACGTTCTTTTCAAAGAGGCATGGTTAACTTATTTCTGGAGAAGAGCTTTATTTCATGGTGTGGAAGAAGATATTGCAGAAGAGCGGCTTCAGTTTTGGATTGCCCGCAGTGGGCAGTCATCAACTTCACATGATGCTGTTGCTTCACATGATGCTGTTGATGTTGAGCGAGGTTTGTTGGAGTTGAGGAAGCTGAGTATAGAACAGCAACTTTGGGAAGCATCTCGGAAGGGAATTGATCAGCCTCAGGGGTCAGCAGATGCTAATCATAAGCCTGCCACTGACTCTGATGCCTCATCCTGA 1746 0.4931 MDRRRNASPVYARQWSGGSSSTGSSSPAMSPAHPQSRLGPSSTVLSTVKRTQNVAAKAAAQRLARVMASQNAAADDGEDDDDLDFRFSAPPPASLSSFSGNANSNRSASANATVIPPISVARPNRSPSPALGRNFAEHTHSVRSTSAGRSAVSVRSAAAVPPNKSTLRAPMAIPPIDPPTNRNREKRFTSDISIRPVNSKDTGDQREASALRDELDMLQEENEVLLEKLRQAEEKRQEVEARTRELEKQVASLGEGVSLEAKLLSRKEAALRQREAALKAAQQTQSGRDEDITALQVEIQNLKDDAAAALEQQQEAEAEANALRTMTQRMILTQEEMEEVVLKRCWLARYWGLAVKHGICADIAQSKHEHWSSLAPLPFELVSSAGQKAKEESWNKSADGPDRSKLVRDLNDLAGEGNIESMLSVEMGLRELASLKVEDAVVLALAQHRRPNLVRQSILDSKSHGDAKYSEAFELSEEEAEDVLFKEAWLTYFWRRALFHGVEEDIAEERLQFWIARSGQSSTSHDAVASHDAVDVERGLLELRKLSIEQQLWEASRKGIDQPQGSADANHKPATDSDASS 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2428 581 Coils Coil 264 284 - -
Ssu1g2428 581 Coils Coil 208 249 - -
Ssu1g2428 581 MobiDBLite consensus disorder prediction 92 109 - -
Ssu1g2428 581 MobiDBLite consensus disorder prediction 12 50 - -
Ssu1g2428 581 PANTHER FAS-BINDING FACTOR-LIKE PROTEIN 1 562 IPR040321 GO:0000911
Ssu1g2428 581 PANTHER MYOSIN 1 562 - -
Ssu1g2428 581 Coils Coil 292 326 - -
Ssu1g2428 581 MobiDBLite consensus disorder prediction 138 206 - -
Ssu1g2428 581 MobiDBLite consensus disorder prediction 70 109 - -
Ssu1g2428 581 MobiDBLite consensus disorder prediction 557 581 - -
Ssu1g2428 581 MobiDBLite consensus disorder prediction 138 152 - -
Ssu1g2428 581 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2428 Ssu-Chr1 67698040 67708335 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2428 1 557 EF-hand Containing Proteins AT5G13260 56.790 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2428 - - gmx:100795139 953.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2428 1 67698040 67708335 Ssu1g2428 1 67698040 67708335 ECH