Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2411 atgaagagaaagagagaaggcaACGGCAAGGAGGGCATGGATATCGTGTGGCAGACCCCAGCGAATCCCCCGCACGCGGATGATTACATCTTTCGAAACGGAATTCGATTTGTTAGACCATACTACTTCGAATTCATCGCtcatGTTAAGAATCGGTGGGCGGGGAAAACCATTGTAGATTTATTCGCTGAGGAGTTTAAAGGTCGACCTTATGAGTATTATGTTAGTGCAGTGAAATGTGGAAGGATTCAAGTGGATGGTGAGATGGTACTGGTTTCATACATAGTTAAACCATCTCAAAAGATAAGCCATTTCTTACACAGTTTCAGGCATGAACCACCTGTGATGGCTTGTGATGTTCCTATTCTTCAAAAAGAACCAGATGTGCTAACTGTTTATAAGCCAGCATCTGTCCCTGTGCATCCATGTGGTCAATATCGTAAGAACACTGTTGTTGGCATTCTTCAAGCTGAGCACGGGCTGGCGCCTCTATTTCCTGTTCATCGACTGGATCGCCTTGTCTCAGGACTTCTTATTTTGGCCAGAAATGCTGCAAAAGCTGACATTTTTAGGCAACAGATAGAAGCTGGCTTAGTCCACAAACAGTATATAGCAAAAGTAGTTGGAGAATTTCCTGAGGATGAGctaaCTGTTGATGCCAGTATAGACTATAATGCACAAGAAGGAAGGAGCACAGCAGAGGTTGGTGACTCTGCAAAGGGGAAGGCTGCCTCTACAAAATTTACTCGGATTAGTACTAATGGAACTCAAAGTATTGTTTTATGTGAACCAATCACTGGCCGTACTCATCAGATACGCGTTCATTTACAGTATTCAGGGCACCCAATAGCCAACGACGTGCTGTACATCTCAGAAGAAACTGTTGATCAATCTGTTAAAGGGTTGAGTGCTGATAGATCAGCTCGCATATCTGATGCTTCTCTGACatcaaattttgatgaaaaagtgCTCAATGAATGCAAAGAAAATTCCAATGGAGATTTTAGCATCGATCCCATGTGTACAAATTGTCCAAATTTGGCACCCAAAGGATATGACGGCGATGAAGAAGGTCTATGGCTACATTGTATTCGTTACACTGGACCTGGATGGACGTATGAGTGTCCATATCCTGATTGGGCGAAACTTACTTAG 1155 0.4165 MKRKREGNGKEGMDIVWQTPANPPHADDYIFRNGIRFVRPYYFEFIAHVKNRWAGKTIVDLFAEEFKGRPYEYYVSAVKCGRIQVDGEMVLVSYIVKPSQKISHFLHSFRHEPPVMACDVPILQKEPDVLTVYKPASVPVHPCGQYRKNTVVGILQAEHGLAPLFPVHRLDRLVSGLLILARNAAKADIFRQQIEAGLVHKQYIAKVVGEFPEDELTVDASIDYNAQEGRSTAEVGDSAKGKAASTKFTRISTNGTQSIVLCEPITGRTHQIRVHLQYSGHPIANDVLYISEETVDQSVKGLSADRSARISDASLTSNFDEKVLNECKENSNGDFSIDPMCTNCPNLAPKGYDGDEEGLWLHCIRYTGPGWTYECPYPDWAKLT 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2411 384 PANTHER PSEUDOURIDINE SYNTHASE 14 383 - -
Ssu1g2411 384 TIGRFAM rluA_subfam: pseudouridine synthase, RluA family 52 300 IPR006225 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Ssu1g2411 384 Pfam RNA pseudouridylate synthase 128 277 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Ssu1g2411 384 SUPERFAMILY Pseudouridine synthase 112 381 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Ssu1g2411 384 CDD PseudoU_synth_ScRIB2 103 382 - -
Ssu1g2411 384 ProSitePatterns Rlu family of pseudouridine synthase signature. 167 181 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Ssu1g2411 384 Gene3D Pseudouridine synthase 113 347 - -
Ssu1g2411 384 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 14 383 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2411 K15454 - gmx:100811500 711.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2411 1 67301006 67312232 Ssu1g2411 1 67301006 67312232 ECH