Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2405 ATGGAGGATTCAGATTCAGATTCAGACCTCGAACTCTACACCATCCCAAGCTCTTCAAGATGGTTCGCGTGGGACGAAATCCACGAAACGGAGAGAACAGCGTTCAAGGAATTCTTCGACGGGAGCTCGATATCGAGAACCCCAAAGATATACAAAGAATACCGAGACTTCATCATCAACAAGTACAGGGAAGAGCCCTCGAGGAGGCTCACCTTCACCGAGGTGCGAAAGTCGCTGGTGGGTGACGTCACGTTCCTGCACAAGGCCTTCCTCTTCCTGGAGAAGTGGGGTTTGATCAACTACGGCGCGCCCTCTGGTGCGGACGCGGAGAAGGAGGAGGACGAGGAGGAGGGATGCAAGGTTCGGCTCGAAGAAGGAGCCCCCAATGGGATTCGCGTGGCGGCGACGCCGAACTCGTTGAAACCCATGTCGGTGCCTCGCAACGCGAAGAGTGGGGGAAACGCGAGCGGGGCTTCTCTCACATTGCCACCGCTGGCGTCGTACTCTGAAGTTTATGGCGATTTGATTAGGCAGAAGGAGGTGAACTGTGGGCTTTGTGGTGACAAATGTGGTTCTGGACATTACCGATGTACCCaggataatttcattatttgtacAAATTGTTTCAAAAGTGGGAATTACGGGGAGAAAAGGTCTGCTGAGGATTTTGTATTAAGTGAGTCAAGTGAAAATAGTGGCAAACATGACACTGTCTGGACTGAGGGAGAAACTCTTCTCCTTTTAGAATCTGTTTTGAAGCATGGGGATGATTGGGAACTTGTTGCTCAAAGTGTTCAAACCAAGACTAAACGTGATTGTATCTCAAAACTCATTGAGCTGCCTTTTGGGGAGCTCATGTTGGGCCCTGCTCACAGAAATGTTAACAGTAACAGTGCTAATGGCATCATGAACACTGCAAAACAAGTTCAGTCATCTTCATCTGACAACCAAGAAACTTCAAAGACAAAGGATCATTCTCCTGAGCTTACAAATGAAAATGAGCAGAACGGAGATGCTGTGAAGGAAAGTCCTTCAAAAAGACAGTGTGTTGCTGCCCTTTCAGATTCCAGCAGTTCACTAATGAATCAGGTGGGACTGATCTCTACTGTTGTTGACCCTCATATCACAGCTGCTGCAGCTGATGCTGCTGTTTCAGCACTTTGTGATGAGAATTTGTGTCCAAGGGAGATATTTGATGTTGAAGGGGATTATGCTTCTCATGTGAACTCTTTGAATAGTTGTTATTCAGCAAGAACTCTTGAGGGTGAAGGTTTAGAGATGGAGAGGTCCTCTCTGTCAGAAATAGATTACAGGTGCCCAAAGGATGGCATACCTTTGACACTGCGTGTAAGGGCTGCCACTGCAACTGCTCTTGGAGCTGCTGCTGCTCAAGCAAAGTTGTTGGCAGACCAGGAAGACAGAGAGATTGAACTTTTGGTAGCAACTATAATTGAAGCACAGATTGAGAAATTGCTACACAAGGTTAAACATTTTGACGATCTGGAGTTCTTGATGGAAAAGGAACACACTGAAATGGAAAATCTACAAGATTCTTTTTTGACTGAACGGATTGATGTGTTACGGAGAACATTGAGATCTGGAATCACTAGATGGAAGGATTATTCTTATGTAAAATCTTAG 1641 0.4589 MEDSDSDSDLELYTIPSSSRWFAWDEIHETERTAFKEFFDGSSISRTPKIYKEYRDFIINKYREEPSRRLTFTEVRKSLVGDVTFLHKAFLFLEKWGLINYGAPSGADAEKEEDEEEGCKVRLEEGAPNGIRVAATPNSLKPMSVPRNAKSGGNASGASLTLPPLASYSEVYGDLIRQKEVNCGLCGDKCGSGHYRCTQDNFIICTNCFKSGNYGEKRSAEDFVLSESSENSGKHDTVWTEGETLLLLESVLKHGDDWELVAQSVQTKTKRDCISKLIELPFGELMLGPAHRNVNSNSANGIMNTAKQVQSSSSDNQETSKTKDHSPELTNENEQNGDAVKESPSKRQCVAALSDSSSSLMNQVGLISTVVDPHITAAAADAAVSALCDENLCPREIFDVEGDYASHVNSLNSCYSARTLEGEGLEMERSSLSEIDYRCPKDGIPLTLRVRAATATALGAAAAQAKLLADQEDREIELLVATIIEAQIEKLLHKVKHFDDLEFLMEKEHTEMENLQDSFLTERIDVLRRTLRSGITRWKDYSYVKS 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2405 546 SUPERFAMILY Homeodomain-like 234 289 IPR009057 -
Ssu1g2405 546 Pfam SWIRM domain 16 101 IPR007526 GO:0005515
Ssu1g2405 546 Gene3D - 235 283 - -
Ssu1g2405 546 SUPERFAMILY Homeodomain-like 11 104 IPR009057 -
Ssu1g2405 546 PANTHER BRAHMA ASSOCIATED PROTEIN 155 KDA 12 535 - -
Ssu1g2405 546 SMART sant 235 283 IPR001005 -
Ssu1g2405 546 Pfam Myb-like DNA-binding domain 239 277 IPR001005 -
Ssu1g2405 546 Gene3D - 19 105 IPR036388 -
Ssu1g2405 546 ProSiteProfiles Myb-like domain profile. 231 273 IPR001005 -
Ssu1g2405 546 CDD SANT 239 276 IPR001005 -
Ssu1g2405 546 Pfam SWIRM-associated region 1 456 531 IPR032451 -
Ssu1g2405 546 PANTHER SWI/SNF COMPLEX-RELATED 12 535 - -
Ssu1g2405 546 MobiDBLite consensus disorder prediction 306 348 - -
Ssu1g2405 546 ProSiteProfiles SWIRM domain profile. 13 110 IPR007526 GO:0005515
Ssu1g2405 546 ProSiteProfiles SANT domain profile. 234 285 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2405 Ssu-Chr1 67179991 67185226 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2405 K11649 - gmx:100800135 844.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2405 1 67179991 67185226 Ssu1g2405 1 67179991 67185226 ECH