Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2401 ATGGTTCAGGATACTGCTCTAAATCATGTCTCCAGCCTTGGGGCAAGTCAGAACGATCTTGGGGTTACTCACGAAATGGACCTTCGCAAACTCATTTGGGTTGTTACTCGAATGCAGGTTCAAGTACAGAGATATAGCAAAcgGGGGGATGAAATTGAGGTTGATACTTGGTTTGATACCGCGGGAAAGAATGGAATGCGAATAGATTGGATAATCAGGGATCATTATACCAAAGAGATCATAGCAAAAGCAACCAGCACATGGGTGATCATGAATAGAGAAACAAGAAGATTATCCAAGATACCTGAAGAAGTTAGACAAGAACTTGTTCCTTTCTGCTTTAATAGGCTTGCCATTGCCAGGGAAGAAATAGATCGTCAGAAGATACACAAGCTCACTGACGCCACTGCTGAGAGTTTTCGATTTGGGGTGACtCCAGGGTGGAACGACATGGATGCTAACCAGCatgttaacaatgtaaaatacaTCAGATGGATCTTAGAGAGCGTGCCAAGAGAAgtattaaaagattataaaatgaCGAGCATGACTTTAGAGTTTCGGCGTGAATGTACGCAATCAGATTTGTTGGAATCAATGACTAGTCTAACATCCAGCGTGATTGGTGCCTCTAATAATAACTCCATTAACAGAAAACCCGACCTGCAATATATACACCTGCTTCGTCTACAAGACGATAAAGCGGAGTTGGTCCGAGCCAGAACAGAATGGCATCTTAAGCGAAGCCACAAGTGA 756 0.414 MVQDTALNHVSSLGASQNDLGVTHEMDLRKLIWVVTRMQVQVQRYSKRGDEIEVDTWFDTAGKNGMRIDWIIRDHYTKEIIAKATSTWVIMNRETRRLSKIPEEVRQELVPFCFNRLAIAREEIDRQKIHKLTDATAESFRFGVTPGWNDMDANQHVNNVKYIRWILESVPREVLKDYKMTSMTLEFRRECTQSDLLESMTSLTSSVIGASNNNSINRKPDLQYIHLLRLQDDKAELVRARTEWHLKRSHK 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2401 251 Pfam Acyl-ACP thioesterase 2 245 IPR002864 GO:0006633|GO:0016790
Ssu1g2401 251 Gene3D Hotdog Thioesterase 1 249 - -
Ssu1g2401 251 PANTHER ACYL-[ACYL-CARRIER-PROTEIN] HYDROLASE 2 249 - -
Ssu1g2401 251 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 2 249 IPR045023 GO:0006633|GO:0016297
Ssu1g2401 251 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 131 245 IPR029069 -
Ssu1g2401 251 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 2 117 IPR029069 -
Ssu1g2401 251 CDD 4HBT 1 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2401 Ssu-Chr1 66888874 66890317 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2401 2 247 Acyl Lipid Metabolism Gene Families AT1G08510 51.626 9.37e-82 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2401 K10781 - gmx:100791811 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2401 1 66888874 66890317 Ssu1g2401 1 66888874 66890317 ECH