Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2400 ATGGCGGCAATCAGCAACATCGGTTTACAATTTCCAGGGAATTTAAGCGATGCAAAGAAGGAGAATGTGGTCACCGCAGGGGAGGTTTTGAGGCTTGGTTTTTATTCTCCACGCAACACTAACATGTCAAATAATAAACCAAGAATTTTGTCGGTGACCGCAAGTTATCATGATAGTCCTCGAAAAATGGACACCGCGAATAGAGTGAATGTGAATGGAATACATGTGGCGGAGGCTCCTCTACAAGCAGGCAAGTTCGCAAATGAAAGCGCATCAGATGAAGCTATTGTTACCAGCTTGCGTGGAAGGTTTGTGGAGGGTAAGTTTGTATTTAGGCAAATTTTTGTTATCAGGTCTTATGAAATTGGACCAGATAAAACTGCCACAATGGAGACACTCATGAATTTTCTTCAGgaAACTGCTTTAAATCATGTCACCAGCTCTGGGATTGGTGGAGACGGATTTGGAGCAACCCGCGAGATGAGCCTGCGAAAACTCATTTGGGTTGTTACTCGTATTCAAGTTCAAGTGCAAAGATATAACAAATGGGGAGACGAAATTGAAGTTGATACTTGGGTCGACGCAGCAGGAAAGAACGGAATGCGAAGAGATTGGATAATCAGGGATCACTACACCAAAGAGATCATAACAAGAGCAACAAGCACATGGGTGATCATGAATAGACAAACAAGAAGACTATCCAAGATACCTGAAGAAGTTAGACAAGAGCTTGTTCCTTTTTACCTTAATAGGCTTGCCGTTGCTACCGAAGAAGTAGATTGTGAAAAGATAGACAAGCTCACTGATGACACTGCTGAGAGAATCCGATCTGGGTTGGCTCCAAGGTGGAATGACATGGATGCTAACCAGCATGTCAACAATGTGAAATACATTGGATGGATTTTAGAGAGCGTGCCGATTGAAGTGCTAGAAGATTATAACATGACGAGCATGACTTTGGAGTATCGGCGTGAATGTACACAATCAAATTTGTTGGAATCCATGACGTGTCCAACAGCAAGAGTTATTGAGTCCAATAATAATTCCAAGAACAGAAAACCCAACCTGCAATACACACACTTGCTTCGTCTGCAACATGATAAAGCAGACGTTGTCCGAGCCAGAACTGAATGGAATTTTAAGCAAAAGCAACAGTGA 1158 0.424 MAAISNIGLQFPGNLSDAKKENVVTAGEVLRLGFYSPRNTNMSNNKPRILSVTASYHDSPRKMDTANRVNVNGIHVAEAPLQAGKFANESASDEAIVTSLRGRFVEGKFVFRQIFVIRSYEIGPDKTATMETLMNFLQETALNHVTSSGIGGDGFGATREMSLRKLIWVVTRIQVQVQRYNKWGDEIEVDTWVDAAGKNGMRRDWIIRDHYTKEIITRATSTWVIMNRQTRRLSKIPEEVRQELVPFYLNRLAVATEEVDCEKIDKLTDDTAERIRSGLAPRWNDMDANQHVNNVKYIGWILESVPIEVLEDYNMTSMTLEYRRECTQSNLLESMTCPTARVIESNNNSKNRKPNLQYTHLLRLQHDKADVVRARTEWNFKQKQQ 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2400 385 CDD 4HBT 111 227 - -
Ssu1g2400 385 PANTHER ACYL-[ACYL-CARRIER-PROTEIN] HYDROLASE 27 384 - -
Ssu1g2400 385 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 27 384 IPR045023 GO:0006633|GO:0016297
Ssu1g2400 385 Pfam Acyl-ACP thioesterase 110 379 IPR002864 GO:0006633|GO:0016790
Ssu1g2400 385 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 276 378 IPR029069 -
Ssu1g2400 385 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 108 252 IPR029069 -
Ssu1g2400 385 Gene3D Hotdog Thioesterase 102 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2400 Ssu-Chr1 66840860 66843094 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2400 102 381 Acyl Lipid Metabolism Gene Families AT1G08510 57.500 1.94e-111 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2400 K10781 - gmx:100791281 688.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2400 1 66840860 66843094 Ssu1g2400 1 66840860 66843094 ECH