Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2392 ATGGAGAAgccgtcgtcgtcgtcgtcgtcacGAAGATCGAACACGAAGGTGAAAGCTTCAAGCGATGCGAACACGAGCTTAAGCATGCTGAACGAGGACCTTCTTCAGAACATTCTAGAGAGGCTTCCTGCGCTACCCTTTGCTTTCGCAGCTTGCGTCAGCAAATCATGGAACTCTCTCTGCAATCGCATCCTCTCTCGTCCCAAACTCTCTTCCGCGCTTTCTCTCAACCCCTCGCTCCCCGATGCCGTGAAAGAGGTTGTTCACAAGGTTCTGTCGGAGCCAATTCGACCCTGTTTTGCTATTGCCAATATTGGAACTGGATTCAAGTCTTCCAAGACTCTGCGACTTATTAGACAGTCGTTGGGGTCCAATATTCCTGTTATTGTTACCGTGGCAAATGGTATTATGGGAAGGGACGTTCTTACTGATGAGTTTAAAGAGGTCAAATGGGGTGCCCTTTTTAGTGGCTTTGGTGAGGAAGCATATGCAAGGCTTATAAATGAAGGCATAGTTTTGACTGTTGGCTATTTGCCTGGATTAAAAGTTGAAGCTGTGCCGTTGCGGCGACCGCCAAAGGCATATCAAGCACCATGGATTGACAATTTTATAAAGGATATTAAGGAATATTCAGCCTCTGTCTCCAGTAGCCCATTCCCTATTGGAATTATATTGTTTGGAGAAGAAAGCACTGACATGAAATTGGTTCTGGAGAAATTGGATTATGCCATGCCTATGGACACTGTCATTGTGGGTGATGAGAGAGGCTCCTTTGACTTTGTACACAAAAGTGGGAATGATTCTAGACTTGTTTGtagtaaaaaaggaaacatagAAGCCGTTGCTCTCGTATTTGCTCAGGACAGAGACAGGTCTTTGGGAACTATTAGGTTTCATGTTGCATTGTCAAATGGTGTTTCAGCTGTGGGTCCCAGATACAAGGCAGCCTCAGTTAAATCAAACAACACTGATTGTTCAACATGGCTAACTGCTAGGAGGGAAGGACAACTGGAACTTCTTGACGGTCAGAGTATTCTACTTGATATCAACAATTTGCTGGATAATCATATGGAGGCTCCTGATTTGTACATTGGGGTAATTAAACATAGGAAACTCTCCACTGGGGCAGAGAAGCCAATGCCAAGAACTTGTATTGCATATCATGGAGTTGTGGGAGGTGATGAAGAGTATCTATATGTTGATGGCATTGGCATAAAAACAGGAGATTTCTTTCAGTTCTACTATTCAGATCCTAATACTGCCTTAGCTTCATTAACCAAGGTCCATGATACCCTCAAGGATATTAAACTGGAAAGAAATTCCAAGAGTTTCAAGGGCGGTGGAGACAACGGTACCAATGTTTTTGGTGGTCTTATTTTTGCTTGTTACGGCCGTGGTGAATCCTTCTTTGGACGTCACAATGTTGATAGCTCTGCTTTCTTGGAGAATTTTCCAGGAGTGTCAGTGTCTGGAATATTTTGTGGTGGAGAAATGGTGCGTCCTTGTACCACTCTGATTGGTCAATGTCAAGGAGCAAGCCCCATTAGTTGCTGTCTGCATGTTTACAGCACTGTCTACTTAGCAATGTCATATACTCCTCCCTCTGCGGAAGATTAG 1617 0.4286 MEKPSSSSSSRRSNTKVKASSDANTSLSMLNEDLLQNILERLPALPFAFAACVSKSWNSLCNRILSRPKLSSALSLNPSLPDAVKEVVHKVLSEPIRPCFAIANIGTGFKSSKTLRLIRQSLGSNIPVIVTVANGIMGRDVLTDEFKEVKWGALFSGFGEEAYARLINEGIVLTVGYLPGLKVEAVPLRRPPKAYQAPWIDNFIKDIKEYSASVSSSPFPIGIILFGEESTDMKLVLEKLDYAMPMDTVIVGDERGSFDFVHKSGNDSRLVCSKKGNIEAVALVFAQDRDRSLGTIRFHVALSNGVSAVGPRYKAASVKSNNTDCSTWLTARREGQLELLDGQSILLDINNLLDNHMEAPDLYIGVIKHRKLSTGAEKPMPRTCIAYHGVVGGDEEYLYVDGIGIKTGDFFQFYYSDPNTALASLTKVHDTLKDIKLERNSKSFKGGGDNGTNVFGGLIFACYGRGESFFGRHNVDSSAFLENFPGVSVSGIFCGGEMVRPCTTLIGQCQGASPISCCLHVYSTVYLAMSYTPPSAED 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2392 538 PANTHER F-BOX ONLY PROTEIN 22 26 537 - -
Ssu1g2392 538 Pfam FIST N domain 112 321 IPR013702 -
Ssu1g2392 538 MobiDBLite consensus disorder prediction 1 22 - -
Ssu1g2392 538 Pfam FIST C domain 404 499 IPR019494 -
Ssu1g2392 538 Pfam F-box domain 27 65 IPR001810 GO:0005515
Ssu1g2392 538 SMART FIST_C_2 359 501 IPR019494 -
Ssu1g2392 538 PANTHER SKP2-LIKE, FIST C DOMAIN, FIST DOMAIN, N-TERMINAL ISOFORM 1 26 537 - -
Ssu1g2392 538 SUPERFAMILY F-box domain 25 62 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2392 Ssu-Chr1 66494542 66504251 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2392 - - gmx:100815778 946.421