Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2383 ATGTCTCGGTCAAGCAGCCCCAGAACGACGCAAGAGTTAGCGATGGAAGGGCAGAAGTACCTGGAAGAAACCATAGAGTACGCTTTCCAGATCCTCTCTTCCATGAACGACGAGCTCTGCAACCCCGTTTTGTGGTCCACCTCTCCCTCCGCCGCCTCTGCCTCCCCCAACGCCCCCTCCTCCAACGGCGACGCCACTTCCGACAACTCCAACCACCACCCCGACAGCGCCGCCGCCACTGCCGGCGCCCTCGAAGAGGCTCGCTTCCGGTACAAGAACGCCGTCGCCGCGCTGCGGACCATTCTCACTGCCATTCCTAACTCCCAGAAGGCAAAAACATTTGACGCCGGTTCAGCTGCTAGCCCTGCTGATGAAGCTGAAATTGAGAAGTTGGAGGAGCGAGCCACTTCTCTAAGAAGGGAGCTTGCCAACAAGAACTTGCACCTGAAGACACTTATAGATCAACTGCGTGATCTTATCACTGATATATCAACATGGCAAAGTCCTTTTTCAACCTAA 519 0.5549 MSRSSSPRTTQELAMEGQKYLEETIEYAFQILSSMNDELCNPVLWSTSPSAASASPNAPSSNGDATSDNSNHHPDSAAATAGALEEARFRYKNAVAALRTILTAIPNSQKAKTFDAGSAASPADEAEIEKLEERATSLRRELANKNLHLKTLIDQLRDLITDISTWQSPFST 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2383 172 MobiDBLite consensus disorder prediction 47 76 - -
Ssu1g2383 172 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 30 2 171 IPR034568 GO:0016592
Ssu1g2383 172 Coils Coil 121 148 - -
Ssu1g2383 172 MobiDBLite consensus disorder prediction 47 81 - -
Ssu1g2383 172 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 30 2 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2383 Ssu-Chr1 66341466 66345112 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2383 - - ccaj:109797165 288.5