Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2374 ATGACGATCATTACTTGCACACCTTCCATTGTCCctttctcttcctcctcctcctcctattCCAATAATTTGTCAAAACACAATATCAATTCAACCTTCCATCTTCTCAACAAACTCACTCTTCCTCGACCCATTCACATTTCAAACACCCTATCTAACCCCACTCCCAAACCTGCCACAGCTTCCACTACCTCACAACCTTTCATTCCTTCAACCCACACCAATCAGCTTAGAAAAGGCGCTGACATTCTCGTAGAGGCTCTCGAACGCCACGGTGTCACCAATGTCTTTGCCTACCCAGGTGGTTGTTCCATGGATATGCACCAAGCACTAAAGCGCTCCAGTATTATAAGAACCATTGTCCCACGCCACGAGCAAGGTGGAGAATTCGCGGCCGAAGGTTACGCACGCTCCACTGGCCTTCCTAGTGTGTGCATCACCACTTCTGGCCCCGGTGCCACCAACCTTGTCACTGGCCTTGCCAATGCTAAGATGGATAGTGTGCCTCTTTTAGCCATTACAGGACAAGTTCCACGCAAAATGATAGGCACTGACTCATTTCAAGAAACGCCTATAGTTGAGATGACACGCTTTATTACAAAGCATAATTATCTTGTTTTGGATGTCAACGATATTCCTAAGGTTGTGAGTGAGGCTTTTTGTATTGCAACTTCGCGAAGACCTGGCCCTGTTCTCATTGATGTACTTAAGGATGTGCAACAGCAGCTTGCAGTTCCTAATTGGGACCAACCAGTTGGACACACTGGGTATGTTTTGCGATTACCTAAGATTCCTTGTGAGGCCTATTTGGAGCAGATTGTGGACTTGATATTGGAGTCCCAAAAACCAGTTTTGTACGTTGGGGGTGGTTGTTTGAACTCGAGCGTGGAGTTGAGGCGCTTTGTGGAGCTTACGGGAATTCCTGTTGCGAGTACCTTGATGGGTCTTGGAGCATTCCCTACTACCGATGAACATTCCCTTCAACTGTTGGGCATGCATGGCACTGTTTATGCAAACTATGCTGTTGATAACAGTGATTTGTTGCTTGCTTTTGGGGTAAGGTTTGATGACCGTGTCACCGGGAAGCTCGAGGCTTTTGCAAGTAAGGCTAAGATTGTTCACATTGATATTGATTCTGCCGAGATTGGGAAGAATAAGCAGGCACACGTGTCAGTTTGTGCGGATTTGAAGTTGGCTTTAGAAGGGATCAATATGATTTTGGAGGATAAGGGAGTGAAGGGTAAGGTTGATCTTGAAGCTTGGAGAGAAGAGCTTAATGTACGGAAACAGAAGTTTCCATTGAGTTATAAGACATTTGAGGATGGGATTTCTCCTCAGTATGCAATTGAGGTTCTTGATGAGTTGACAAATGGGGATGCCATTATTAGTACAGGGGTTGGGCAACATCAAATGTGGGCTGCACAGTTTTACAAGTACAAGAGACCTAGGCAGTGGTTGACCTCAGGGGGTCTTGGAGCTATGGGTTTTGGATTGCCTGCTGCTATTGTGCTGCTTTTGTGGTTGACATTGATGGGAATGGGAGTTTCATTATGA 1554 0.4505 MTIITCTPSIVPFSSSSSSYSNNLSKHNINSTFHLLNKLTLPRPIHISNTLSNPTPKPATASTTSQPFIPSTHTNQLRKGADILVEALERHGVTNVFAYPGGCSMDMHQALKRSSIIRTIVPRHEQGGEFAAEGYARSTGLPSVCITTSGPGATNLVTGLANAKMDSVPLLAITGQVPRKMIGTDSFQETPIVEMTRFITKHNYLVLDVNDIPKVVSEAFCIATSRRPGPVLIDVLKDVQQQLAVPNWDQPVGHTGYVLRLPKIPCEAYLEQIVDLILESQKPVLYVGGGCLNSSVELRRFVELTGIPVASTLMGLGAFPTTDEHSLQLLGMHGTVYANYAVDNSDLLLAFGVRFDDRVTGKLEAFASKAKIVHIDIDSAEIGKNKQAHVSVCADLKLALEGINMILEDKGVKGKVDLEAWREELNVRKQKFPLSYKTFEDGISPQYAIEVLDELTNGDAIISTGVGQHQMWAAQFYKYKRPRQWLTSGGLGAMGFGLPAAIVLLLWLTLMGMGVSL 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2374 517 Gene3D - 441 504 - -
Ssu1g2374 517 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 465 502 IPR011766 GO:0003824|GO:0030976
Ssu1g2374 517 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 70 251 IPR029061 -
Ssu1g2374 517 Gene3D - 68 261 - -
Ssu1g2374 517 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 79 242 IPR012001 GO:0030976
Ssu1g2374 517 Gene3D - 267 440 - -
Ssu1g2374 517 Pfam Thiamine pyrophosphate enzyme, central domain 271 401 IPR012000 GO:0000287|GO:0030976
Ssu1g2374 517 MobiDBLite consensus disorder prediction 47 73 - -
Ssu1g2374 517 SUPERFAMILY DHS-like NAD/FAD-binding domain 269 433 IPR029035 -
Ssu1g2374 517 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 441 502 IPR029061 -
Ssu1g2374 517 PANTHER ACETOLACTATE SYNTHASE 43 502 - -
Ssu1g2374 517 CDD TPP_PYR_POX_like 82 235 - -
Ssu1g2374 517 PANTHER THIAMINE PYROPHOSPHATE ENZYMES 43 502 IPR045229 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2374 Ssu-Chr1 66244437 66245990 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2374 K01652 - gmx:100782250 730.709