Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2369 ATGAGAAGGCCATGGaaacattttaacaaaaaacaTGACTTCTTCGAGTGTCTCCCCGACGATCTCGTTGTCTTCATTCTCTCTAAACTCAGCTCCACCGCTTCTTCCGCTTCCGatttcatcaacatcattttaACaTGCAAGAGGCTAAACCGGTTAGGCCTGCACCGTCTTGTGTTGTCTAAAGCTGGGCCTAAAGTATTTGCCATAAAGCCCAAAAATTGGTCAGAACATGCTCACTGCTTTCTTAAACACTGCGTTAACGCCGGGAACCTCGACGCCTCTTACACTCTCGGAATGATCCGATTTTACTGTCTGCAAAACCGCGGGAGCGGACTTTCGCTAATGGCGAAGGCAGCGATGAAGTTACACGCGCCGGCGCTGTACTCGCTGTCGGTGATTCAGTTCAACGGGAGCGGAGGTTCCAAGCGCGACAAAGATCTACGCGCGGGCGTGGCGTTGTCGCTACGCGCGTCGTTGCTTGGCCACATCGACGCGCTTCGGGAGTTGGGCCATTGCCTTCAAGACGGTTACGGAGTCCGGCAGAACGTGGCGGAGGGGCGGCGCCTGCTGGTGCAGGCCAACGTGCGTGAACTCGCGTACGTGCTACGCCAGGTGGCGCCTTCACGCTCTGTCCCCTCGCTGCTAACGTGGCGCGCGCTGAGGTGTCACAGGGAGGCGGCGTGTCCGTTGCTGAGTGACTACGGGTACAACGTGGCGGTGCCGGAAGTGCAGCCGGCAAATTGGTTTTTAAGGGAGTGGTTCGAGTCAGGTCTAGGCAAGCTAGAGGAGGGACTGAGGCTGTGCGCGCACATTGGGTGTGGACGACCCGAGACGCGCCCGCACGAGTTTCGGCGGTGTTCGGTTTGCGGCAAAGTTAACTATTGTTCCCGTGGATGTCAAGCGCTGGATTGGAAGTTGCGCCACAAGGTGGAGTGTTCGCCGGTGGAACTGTATGGTGGGGCTGGGGGTGACGATGGGGTGGACGTGGAAAATAACTTTGTGGTCCCGAACGCTGCCGTTTGA 1026 0.5585 MRRPWKHFNKKHDFFECLPDDLVVFILSKLSSTASSASDFINIILTCKRLNRLGLHRLVLSKAGPKVFAIKPKNWSEHAHCFLKHCVNAGNLDASYTLGMIRFYCLQNRGSGLSLMAKAAMKLHAPALYSLSVIQFNGSGGSKRDKDLRAGVALSLRASLLGHIDALRELGHCLQDGYGVRQNVAEGRRLLVQANVRELAYVLRQVAPSRSVPSLLTWRALRCHREAACPLLSDYGYNVAVPEVQPANWFLREWFESGLGKLEEGLRLCAHIGCGRPETRPHEFRRCSVCGKVNYCSRGCQALDWKLRHKVECSPVELYGGAGGDDGVDVENNFVVPNAAV 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2369 341 SUPERFAMILY HIT/MYND zinc finger-like 267 316 - -
Ssu1g2369 341 SUPERFAMILY F-box domain 10 78 IPR036047 GO:0005515
Ssu1g2369 341 SUPERFAMILY HCP-like 77 194 - -
Ssu1g2369 341 Gene3D - 261 316 - -
Ssu1g2369 341 ProSiteProfiles Zinc finger MYND-type profile. 271 313 IPR002893 -
Ssu1g2369 341 Pfam MYND finger 274 313 IPR002893 -
Ssu1g2369 341 Gene3D Tetratricopeptide repeat domain 67 210 IPR011990 GO:0005515
Ssu1g2369 341 PANTHER MYND DOMAIN-CONTAINING 6 328 IPR044508 -
Ssu1g2369 341 PANTHER HCP FAMILY PROTEIN WITH MYND-TYPE ZINC FINGER PROTEIN 6 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2369 Ssu-Chr1 66158846 66160144 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2369 - - gmx:100820040 597.43